Bibliographic references for the synthetic tree

The following studies (listed alphabetically by first author) have contributed to the current synthetic tree.

A. Bucklin, B. Frost, J. Bradford-Grieve, L. Allen, N. Copley, 2003, 'Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae', Marine Biology, vol. 142, no. 2, pp. 333-343
Quintero, Esther, Camila C. Ribas, Joel Cracraft. 2012. The Andean Hapalopsittaca parrots (Psittacidae, Aves): an example of montane-tropical lowland vicariance. Zoologica Scripta 42 (1): 28-43.
A. C. Schneider, W. A. Freyman, C. M. Guilliams, Y. P. Springer, B. G. Baldwin, 2016, 'Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales)', American Journal of Botany, vol. 103, no. 2, pp. 221-232
A. Delgado-Salinas, M. Thulin, R. Pasquet, N. Weeden, M. Lavin. 2011. Vigna (Leguminosae) sensu lato: The names and identities of the American segregate genera. American Journal of Botany 98(10):1694-1715.
A. E. Syme, T. H. Oakley, 2011, 'Dispersal between Shallow and Abyssal Seas and Evolutionary Loss and Regain of Compound Eyes in Cylindroleberidid Ostracods: Conflicting Conclusions from Different Comparative Methods', Systematic Biology, vol. 61, no. 2, pp. 314-336
A. Manegold, 2008, 'Composition and phylogenetic affinities of vangas (Vangidae, Oscines, Passeriformes) based on morphological characters', Journal of Zoological Systematics and Evolutionary Research, vol. 46, no. 3, pp. 267-277
A. da Marcela Vasco-Palacios, C. Lopez-Quintero, A. E. Franco-Molano, T. Boekhout, 2014, 'Austroboletus amazonicus sp. nov. and Fistulinella campinaranae var. scrobiculata, two commonly occurring boletes from a forest dominated by Pseudomonotes tropenbosii (Dipterocarpaceae) in Colombian Amazonia', Mycologia, vol. 106, no. 5, pp. 1004-1014
ALICE CIBOIS, JEAN-CLAUDE THIBAULT, ERIC PASQUET, 2008, 'Systematics of the extinct reed warblers Acrocephalus of the Society Islands of eastern Polynesia', Ibis, vol. 150, no. 2, pp. 365-376
Adam L. Bazinet, Michael P. Cummings, Kim T. Mitter, Charles W. Mitter, 2013, 'Can RNA-Seq Resolve the Rapid Radiation of Advanced Moths and Butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An Exploratory Study', PLoS ONE, vol. 8, no. 12, p. e82615
Adamcik S., Slovak M., Eberhardt U., Ronikier A., Jairus T., Hampe F., & Verbeken A. 2016. Molecular inference, multivariate morphometrics and ecological assessment are applied in concert to delimit species in the Russula clavipes complex. Mycologia, 108(4): 716-730.
Aggerbeck, Marie, Jon Fjeldså, Les Christidis, Pierre-Henri Fabre, Knud Andreas Jønsson. 2014. Resolving deep lineage divergences in core corvoid passerine birds supports a proto-Papuan island origin. Molecular Phylogenetics and Evolution 70: 272-285.
Agnarsson, I., Zambrana-torrelio C.M., Flores saldaña N.P., & May-collado L.M. 2011. A time-calibrated species-level phylogeny of bats (Chiroptera, Mammalia). PLoS Currents: Tree of Life, Version 44.
Agorreta, Ainhoa, Diego San Mauro, Ulrich Schliewen, James L. Van Tassell, Marcelo Kovačić, Rafael Zardoya, Lukas Rüber. 2013. Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution 69 (3): 619-633.
Ahyong, S., Lai J., Sharkey D., Colgan D., & Ng P. 2007. Phylogenetics of the brachyuran crabs (Crustacea: Decapoda): the status of Podotremata based on small subunit nuclear ribosomal RNA. Molecular Phylogenetics and Evolution 45 (2): 576-586.
Ainscough, B. J., Breinholt, J. W., Robison, H. W., & Crandall, K. A. (2013). Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae). Zoologica Scripta.
Alencar, Laura R.V., Tiago B. Quental, Felipe G. Grazziotin, Michael L. Alfaro, Marcio Martins, Mericien Venzon, Hussam Zaher. 2016. Diversification in vipers: Phylogenetic relationships, time of divergence and shifts in speciation rates. Molecular Phylogenetics and Evolution 105: 50-62
Alex Dornburg, Jon Moore, Jeremy M. Beaulieu, Ron I. Eytan, Thomas J. Near, 2014, 'The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes)', Evolution, vol. 69, no. 1, pp. 146-161
Alexandra S. Petrunina, Tatyana V. Neretina, Nikolay S. Mugue, Gregory A. Kolbasov, 2013, 'Tantulocarida versus Thecostraca: inside or outside? First attempts to resolve phylogenetic position of Tantulocarida using gene sequences', Journal of Zoological Systematics and Evolutionary Research, vol. 52, no. 2, pp. 100-108
Aliabadian, Mansour, Mohammad Kaboli, Roger Prodon, Vincent Nijman, Miguel Vences. 2007. Phylogeny of Palaearctic wheatears (genus Oenanthe)—Congruence between morphometric and molecular data. Molecular Phylogenetics and Evolution 42 (3): 665-675
Allen G. Collins, Bastian Bentlage, Alberto Lindner, Dhugal Lindsay, Steven H.D. Haddock, Gerhard Jarms, Jon L. Norenburg, Thomas Jankowski, Paulyn Cartwright, 2008, 'Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights on the evolution of some problematical taxa', Journal of the Marine Biological Association of the United Kingdom, vol. 88, no. 08, p. 1673
Allen G., Soltis D., & Soltis P. 2003. Phylogeny and biogeography of Erythronium (Liliaceae) inferred from chloroplast matK and nuclear rDNA ITS sequences. Systematic Botany, 28(3): 512-523.
Almeida, Francisca C., Norberto P. Giannini, Nancy B. Simmons, Kristofer M. Helgen. 2014. Each flying fox on its own branch: a phylogenetic tree for Pteropus and related genera (Chiroptera: Pteropodidae). Molecular Phylogenetics and Evolution 77: 83-95.
Alstrom, P., D. M. Hooper, Y. Liu, U. Olsson, D. Mohan, M. Gelang, H. Le Manh, J. Zhao, F. Lei, T. D. Price. 2014. Discovery of a relict lineage and monotypic family of passerine birds. Biology Letters 10 (3): 20131067-20131067.
Alström, Per, Keith N. Barnes, Urban Olsson, F. Keith Barker, Paulette Bloomer, Aleem Ahmed Khan, Masood Ahmed Qureshi, Alban Guillaumet, Pierre-André Crochet, Peter G. Ryan. 2013. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular Phylogenetics and Evolution 69 (3): 1043-1056.
Amanda F. Cunha, Allen G. Collins, Antonio C. Marques, 2017, 'Phylogenetic relationships of Proboscoida Broch, 1910 (Cnidaria, Hydrozoa): Are traditional morphological diagnostic characters relevant for the delimitation of lineages at the species, genus, and family levels?', Molecular Phylogenetics and Evolution, vol. 106, pp. 118-135
Andrea M. Quattrini, Samuel E. Georgian, Luke Byrnes, Alex Stevens, Rosalia Falco, Erik E. Cordes, 2013, 'Niche divergence by deep-sea octocorals in the genusCallogorgiaacross the continental slope of the Gulf of Mexico', Molecular Ecology, vol. 22, no. 15, pp. 4123-4140
Anker, A., & Baeza J. 2012. Molecular and morphological phylogeny of hooded shrimps, genera Betaeus and Betaeopsis (Decapoda, Alpheidae): testing the Center of Origin biogeographic model and evolution of life history traits. Molecular Phylogenetics and Evolution 64 (3): 401-415.
Annie R Lindgren, Molly S Pankey, Frederick G Hochberg, Todd H Oakley, 2012, 'A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment', BMC Evolutionary Biology, vol. 12, no. 1, p. 129
Aoki T., & O'donnell K. 1999. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the group 1 population of F. graminearum. Mycologia, 1999(4): 597-609.
Aoki T., O'donnell K., Homma Y., & Lattanzi A. 2003. Sudden death syndrome of soybean is caused by two morphologically and phylogenetically distinct species within the Fusarium solani species complex, F. virguliforme in North America and F. tucumaniae in South America. Mycologia, 95(4): 660-684.
Aoki T., Scandiani M.M., & O'donnell K. 2011. Phenotypic, molecular phylogenetic and pathogenetic characterization of Fusarium crassistipitatum sp. nov., a novel soybean sudden death syndrome pathogen from Argentina and Brazil. Mycoscience, 53(3), 167-186
Aoki T., Suga H., Hyakumachi M., Scandiani M.M., & O'donnell K. 2012. Fusarium azukicola sp. nov., a novel exotic azuki bean root-rot pathogen in Hokkaido, Japan. Mycologia, 104(5): 1068-1084.
Arbabi, Tayebeh, Javier Gonzalez, Michael Wink. 2014. A re-evaluation of phylogenetic relationships within reed warblers (Aves: Acrocephalidae) based on eight molecular loci and ISSR profiles. Molecular Phylogenetics and Evolution 78: 304-313.
Arcila, Dahiana, Guillermo Ortí, Richard Vari, Jonathan W. Armbruster, Melanie L. J. Stiassny, Kyung D. Ko, Mark H. Sabaj, John Lundberg, Liam J. Revell, Ricardo Betancur-R., 2017, 'Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life', Nature Ecology & Evolution, vol. 1, p. 0020
Armbruster J.W. 2004. Phylogenetic relationships of the suckermouth armoured catfishes (Loricariidae) with emphasis on the Hypostominae and the Ancistrinae. Zoological Journal of the Linnean Society, 141(1): 1-80.
Armenta, Jessica K., Jason D. Weckstein, Daniel F. Lane. 2005. Geographic variation in mitochondrial DNA sequences of an Amazonian nonpasserine: The Black-spotted Barbet complex. The Condor 107 (3): 527-536.[0527:gvimds];2
Arshad, Muhammad, Javier Gonzalez, Abdel Aziz El-Sayed, Tim Osborne, Michael Wink. 2009. Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers. Journal of Ornithology 150 (2): 419-430.
Arunpak Pitakpong, Ekaphan Kraichak, Khwanruan Butsathorn Papong, Nooduan Muangsan, Pongthep Suwanwaree, H. Thorsten Lumbsch, Robert Lücking, 2015, 'New species and records of the lichen genus Graphis (Graphidaceae, Ascomycota) from Thailand', The Lichenologist, vol. 47, no. 05, pp. 335-342
Astrid Cornils, Leocadio Blanco-Bercial, 2013, 'Phylogeny of the Paracalanidae Giesbrecht, 1888 (Crustacea: Copepoda: Calanoida)', Molecular Phylogenetics and Evolution, vol. 69, no. 3, pp. 861-872
Baeza, J. 2013. Baeza, J.A. 2013. Multi-locus molecular phylogeny of broken-back shrimps (genus Lysmata and allies): a test of the 'Tomlinson-Ghiselin' hypothesis explaining the evolution of simultaneous hermaphroditism. Molecular Evolution and Phylogenetics 69 (1): 46-62.
Baker, Allan J., Sergio L Pereira, Tara A Paton. 2007. Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds. Biology. Letters 3 (2): 205-210.
Baldwin B.G., Kalisz S., & Armbruster W.S. 2011. Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae). American Journal of Botany, 98(4): 731-753.
Ban S., Sakane T., Toyama K., & Nakagiri A. 2009. Teleomorph-anamorph relationships and reclassification of Cordyceps cuboidea and its allied species. Mycoscience, 50: 261-272.
Banks, J., & Paterson A. 2004. A penguin-chewing louse (Insecta: Phthiraptera) phylogeny derived from morphology. Invertebrate Systematics 18 (1): 89-100.
Barker, F. K., K. J. Burns, J. Klicka, S. M. Lanyon, I. J. Lovette. 2013. Going to extremes: contrasting rates of diversification in a recent radiation of New World passerine birds. Systematic Biology 62 (2): 298-320.
Barker, F. Keith, Alice Cibois, Peter Schikler, Julie Feinstein, Joel Cracraft. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America 101 (30): 11040-11045.
Barker, F. Keith, Kevin J. Burns, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2015. New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies. The Auk 132 (2): 333-348.
Barker, F.K. 2014. Mitogenomic data resolve basal relationships among passeriform and passeridan birds. Molecular Phylogenetics and Evolution 79: 313-324.
Barnes I., Roux J., Wingfield B., Dudzinski M., Old K., & Wingfield M.J. 2003. Ceratocystis pirilliformis, a new species from Eucalyptus nitens in Australia. Mycologia 95, no. 5 (2003): 865-871.
Barns, S. M., C. F. Delwiche, J. D. Palmer, N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences 93 (17): 9188-9193.
Bartosova P., Fiala I., & Hypsa V. 2009. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Molecular Phylogenetics and Evolution, 53(1): 81-93.
Bayha K.M., & Dawson M.N. 2010. A new family of allomorphic jellyfishes, Drymonematidae (Scyphozoa, Discomedusae), emphasizes evolution in the functional morphology and trophic ecology of gelatinous zooplankton. Biological Bulletin, 219(3).
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Bazinet, A. L., Mitter, K. T., Davis, D. R., Van Nieukerken, E. J., Cummings, M. P., & Mitter, C. (2017). Phylotranscriptomics resolves ancient divergences in the Lepidoptera. Systematic Entomology, 42(2), 305-316
Bell, C. D. (2007). Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA. Molecular phylogenetics and evolution, 44(3), 929-941.
Benayahu Y, Ofwegen LP van, Soong K, Dai C-F, Jeng M-S, Shlagman A, Hsieh HJ, McFadden CS (2013) Diversity and distribution of Octocorals (Coelenterata: Anthozoa) on the coral reefs of Penghu, Taiwan. Zoological Studies 51: 1529-1548.
Bendiksby, M., Thorbek, L., Scheen, A. C., Lindqvist, C., & Ryding, O. (2011). An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon, 60(2), 471-484.
Benjamin Ollomo, Patrick Durand, Franck Prugnolle, Emmanuel Douzery, Celine Arnathau, Dieudonne Nkoghe, Eric Leroy, Francois Renaud, 2009, 'A New Malaria Agent in African Hominids', PLoS Pathogens, vol. 5, no. 5, p. e1000446
Benny K. K. Chan, Hsiu-Chin Lin, Yi-Yang Chen, 2013, 'Biodiversity and host specificity of coral barnacles of Galkinia (Cirripedia: Pyrgomatidae) in Taiwan, with descriptions of six new species', Journal of Crustacean Biology, vol. 33, no. 3, pp. 392-431
Benny K.K. CHAN, Chi Chiu CHEANG, I-Han CHEN, Gregory A. KOLBASOV, 2013, '<p><strong>Acrothoracican barnacles (Lithoglyptida) in Taiwan, including the taxonomic status of <em>Balanodytes</em> <em>taiwanus</em> Utinomi, 1950 and cryptic diversity of <em>Auritoglyptes bicornis</em> (Aurivillius, 1892)</strong></p>', Zootaxa, vol. 3694, no. 3, p. 221
Bentlage B. 2010. Evolution of box jellyfish (Cnidaria: Cubozoa), a group of highly toxic invertebrates. Proceedings of the Royal Society B: Biological Sciences, 277(1680): 493-501.
Benz, Brett W., Mark B. Robbins, A. Townsend Peterson. 2006. Evolutionary history of woodpeckers and allies (Aves: Picidae): placing key taxa on the phylogenetic tree. Molecular Phylogenetics and Evolution 40 (2): 389-399.
Benz, Brett W., Mark B. Robbins. 2011. Molecular phylogenetics, vocalizations, and species limits in Celeus woodpeckers (Aves: Picidae). Molecular Phylogenetics and Evolution 61 (1): 29-44.
Beresford, P., F.K. Barker, P.G. Ryan, T.M. Crowe. 2005. African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary 'enigmas'. Proceedings of the Royal Society B: Biological Sciences 272 (1565): 849-858
Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299
Besnard, Guillaume, Joris A. M. Bertrand, Boris Delahaie, Yann X. C. Bourgeois, Emeline Lhuillier, Christophe Thébaud. 2015. Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura). Biological Journal of the Linnean Society 117 (1): 71-82
Betancur-R., Ricardo, Richard E. Broughton, Edward O. Wiley, Kent Carpenter, J. Andrés López, Chenhong Li, Nancy I. Holcroft, Dahiana Arcila, Millicent Sanciangco, James C Cureton II, Feifei Zhang, Thaddaeus Buser, Matthew A. Campbell, Jesus A Ballesteros, Adela Roa-Varon, Stuart Willis, W. Calvin Borden, Thaine Rowley, Paulette C. Reneau, Daniel J. Hough, Guoqing Lu, Terry Grande, Gloria Arratia, Guillermo Ortí. 2013. The Tree of Life and a New Classification of Bony Fishes. PLoS Currents
Bhushan Shrestha, Min Woo Hyun, Junsang Oh, Jae-Gu Han, Tae Ho Lee, Jae Youl Cho, Hyojeung Kang, Seong Hwan Kim, Gi-Ho Sung, 2014, 'Molecular evidence of a teleomorph-anamorph connection between Cordyceps scarabaeicola and Beauveria sungii and its implication for the systematics of Cordyceps sensu stricto', Mycoscience, vol. 55, no. 3, pp. 231-239
Bills G., Polishook J., Goetz M., Sullivan R., & White J. 2002. Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels. Mycological Progress, 1(1): 3-17.
Bischoff J., Sullivan R., Kjer K., & Jr J. 2004. Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota). Mycologia, 96: 1088-1094.
Bischoff, Joseph F., Priscila Chaverri, and James F. White. "Clarification of the host substrate of Ascopolyporus and description of Ascopolyporus philodendrus sp. nov." Mycologia 97.3 (2005): 710-717.
Bischoff, Joseph F., Stephen A. Rehner, and Richard A. Humber. "A multilocus phylogeny of the Metarhizium anisopliae lineage." Mycologia 101.4 (2009): 512-530.
Blanchard, Benjamin D., Corrie S. Moreau. 2016. Defensive traits exhibit an evolutionary trade-off and drive diversification in ants. Evolution
Blanco, Oscar, Ana Crespo, Pradeep K. Divakar, John A. Elix, and H. Thorsten Lumbsch. "Molecular phylogeny of parmotremoid lichens (Ascomycota, Parmeliaceae)." Mycologia 97, no. 1 (2005): 150-159.
Blaxter, Mark L., Paul De Ley, James R. Garey, Leo X. Liu, Patsy Scheldeman, Andy Vierstraete, Jacques R. Vanfleteren, Laura Y. Mackey, Mark Dorris, Linda M. Frisse, J. T. Vida, W. Kelley Thomas. 1998. A molecular evolutionary framework for the phylum Nematoda. Nature 392 (6671): 71-75.
Blechschmidt, Karin, Hans-Ulrich Peter, Jacobus De Korte, Michael Wink, Ingrid Seibold, Andreas J. Helbig. 1993. Investigations on the molecular systematics of skuas (Stercorariidae). Zool. Jb. Syst. 120: 379-387.
Boatwright J., Roux M., Wink M., Morozova T., & Wyk B. 2008. Phylogenetic Relationships of the Tribe Crotalarieae (Fabaceae) Inferred from DNA Sequences and Morphology. Systematic botany, 33(4), 752-761.
Boatwright J., Savolainen V., Wyk B., Schutte-vlok A., Forest F., & Bank M. 2007. Systematic position of the anomolous genus Cadia and the phylogeny of the tribe Podalyrieae (Fabaceae). Systematic Botany, 33(1), 133-147.
Bock, Christina, Wei Luo, Wolf-Henning Kusber, Eberhard Hegewald, Marie Pažoutová, Lothar Krienitz. 2013. Classification of crucigenoid algae: phylogenetic position of the reinstated genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta). Journal of Phycology 49 (2): 329-339
Bonaccorso, Elisa, Juan M. Guayasamin, A. Townsend Peterson, Adolfo G. Navarro-Sigüenza. 2011. Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae). Zoologica Scripta 40 (4): 336-349.
Bonnie R. Lei, Kevin J. Olival, 2014, 'Contrasting Patterns in Mammal–Bacteria Coevolution: Bartonella and Leptospira in Bats and Rodents', PLoS Neglected Tropical Diseases, vol. 8, no. 3, p. e2738
Bracken, H. D., De Grave, S., Toon, A., Felder, D. L., & Crandall, K. A. 2010. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). Zoologica Scripta 39 (2): 198-212.
Bracken-Grissom, Heather D., Maren E. Cannon, Patricia Cabezas, Rodney M. Feldmann, Carrie E. Schweitzer, Shane T. Ahyong, Darryl L. Felder, Rafael Lemaitre, and Keith A. Crandall. 2013. A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda). BMC Evolutionary Biology 13 (1): 128.
Bracken-Grissom, Heather D., Shane T. Ahyong, Richard D. Wilkinson, Rodney M. Feldmann, Carrie E. Schweitzer, Jesse W. Breinholt, Matthew Bendall, Ferran Palero, Tin-Yam Chan, Darryl L. Felder, Rafael Robles, Ka-Hou Chu, Ling-Ming Tsang, Dohyup Kim, Joel W. Martin, and Keith A. Crandall. 2014. The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology: syu008v1-syu008.
Bracken‐Grissom, H. D., Felder, D. L., Vollmer, N. L., Martin, J. W., & Crandall, K. A. (2012). Phylogenetics links monster larva to deep‐sea shrimp. Ecology and Evolution 2 (10): 2367-2373.
Brady, S., Schultz T., Fisher B., & Ward P. 2006. Evaluating alternative hypotheses for the early evolution and diversification of ants. Proceedings of the National Academy of Sciences of the United States of America, 103 (48): 18172-18177.
Breinholt, JW, Porter ML, Crandall KA (2012) Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae). PLoS ONE 7 (9): e46105
Bremer, B., & Eriksson, O. 2009. Time tree of Rubiaceae: Phylogeny and dating the family, subfamilies and tribes. Internat. J. Plant Sci. 170: 766-793.
Brett R. Aiello, Mark W. Westneat, Melina E. Hale, 2017, 'Mechanosensation is evolutionarily tuned to locomotor mechanics', Proceedings of the National Academy of Sciences, vol. 114, no. 17, pp. 4459-4464
Brown, G. K., Murphy, D. J., Miller, J. T., & Ladiges, P. Y. (2008). Acacia ss. and its relationship among tropical legumes, Tribe Ingeae (Leguminosae: Mimosoideae). Systematic Botany, 33(4), 739-751.
Brumfield, R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61 (2): 346-367.
Burlakoti R.R., Neate S.M., Adhikari T., Gyawali S., Salas B., Steffenson B.J., & Schwarz P.B. 2011. Trichothecene Profiling and Population Genetic Analysis of Gibberella zeae from Barley in North Dakota and Minnesota. Phytopathology, 101(6): 687-695.
Burlakoti, R. R., S. Ali, G. A. Secor, S. M. Neate, M. P. McMullen, and T. B. Adhikari. "Genetic relationships among populations of Gibberella zeae from barley, wheat, potato, and sugar beet in the Upper Midwest of the United States." Phytopathology 98, no. 9 (2008): 969-976.
Burleigh, J. Gordon, Rebecca T. Kimball, Edward L. Braun. 2015. Building the avian tree of life using a large-scale, sparse supermatrix. Molecular Phylogenetics and Evolution 84: 53-63
Burns, J. H., Faden, R. B., & Steppan, S. J. 2011. Phylogenetic studies in the Commelinaceae subfamily Commelinoideae inferred from nuclear ribosomal and chloroplast DNA sequences. Syst. Bot. 36: 268-276.
Burns, Kevin J., Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution 75: 41-77.
Bärmann, E.V., Rössner G.E., & Wörheide G. 2013. A revised phylogeny of Antilopini (Bovidae, Artiodactyla) using combined mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 67 (2): 484-493.
Cabezas, P., Sanmartin I., Paulay G., Macpherson E., & Machordom A. 2011. Deep under the sea: unraveling the evolutionary history of the deep-sea squat lobster Paramunida (Decapoda, Munididae). Evolution 66 (6): 1878-1896.
Cabrera L., Salazar G., Chase M., Mayo S., Bogner J., & Davila P. 2008. Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and non-coding plastid DNA. American Journal of Botany, 95: 1153-1165.
Callejas R., Davidson C., Jaramillo M., Smith J., Stevens A., & Tepe E. 2008. A phylogeny of the tropical genus Piper using ITS and the chloroplast intron psbJ-petA. Systematic Botany, 33(4), 647-660.
Camara M., Palm M., Van berkum P., & O'neill N. 2002. Molecular phylogeny of Leptosphaeria and Phaeosphaeria. Mycologia, 94(4): 630-640.
Cardillo, Marcel, Olaf R. P. Bininda-Emonds, Elizabeth Boakes, Andy Purvis. 2004. A species-level phylogenetic supertree of marsupials. Journal of Zoology 264 (1): 11-31.
Cardoso D.B., Cavalcante de lima H., Sch?tz rodrigues R., Queiroz L.P., Pennington R., & Lavin M. 2012. The Bowdichia clade of Genistoid legumes: phylogenetic analysis of combined molecular (ITS, matK and trnL intron) and morphological data and a recircumscription of Diplotropis. Taxon, 61(5): 1074?1087.
Cardoso D.B., Queiroz L.P., Cavalcante de lima H., Suganuma E., Van den berg C., & Lavin M. 2013. A molecular phylogeny of the Vataireoid legumes underscores floral evolvability that is general to many early-branching papilionoid lineages. American Journal of Botany, 100(2): 403-421.
Cardoso D.B., Queiroz L.P., Pennington R., Cavalcante de lima H., Fonty E., Wojciechowski M., & Lavin M. 2012. Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early-branching lineages. American Journal of Botany, 99(12): 1991-2013.
Cariaga, K. A., Pruski, J. F., Oviedo, R., Anderberg, A. A., Lewis, C. E., & Francisco-Ortega, J. (2008). Phylogeny and systematic position of Feddea (Asteraceae: Feddeeae): a taxonomically enigmatic and critically endangered genus endemic to Cuba. Systematic Botany, 33(1), 193-202.
Carlos Montero-Castro, J., Delgado-Salinas, A., De Luna, E., & Eguiarte, L. E. (2006). Phylogenetic Analysisof Cestrum Section Habrothamnus (Solanaceae) Based on Plastid and Nuclear DNA Sequences. Systematic botany, 31(4), 843-850.
Cartwright, P., Evans N., Dunn C., Marques A., Miglietta M., & Collins A. 2008. Phylogenetics of Hydroidolina (Cnidaria, Hydrozoa). Journal of the Marine Biological Association of the United Kingdom 88 (8): 1663-1672.
Catherine McFadden, Leen van Ofwegen, 2013, 'Molecular phylogenetic evidence supports a new family of octocorals and a new genus of Alcyoniidae (Octocorallia, Alcyonacea)', ZooKeys, vol. 346, pp. 59-83
Cerasale, David J., Roi Dor, David W. Winkler, Irby J. Lovette. 2012. Phylogeny of the Tachycineta genus of New World swallows: insights from complete mitochondrial genomes. Molecular Phylogenetics and Evolution 63 (1): 64-71.
Chakrabarty, Prosanta, Matthew P. Davis, W. Leo Smith, Zachary H. Baldwin, John S. Sparks. 2011. Is sexual selection driving diversification of the bioluminescent ponyfishes (Teleostei: Leiognathidae)? Molecular Ecology 20 (13): 2818-2834.
Chambers, GK, Moeke, C, Steel, R, Trueman, JWH. 2009. Phylogenetic analysis of the 24 named albatross taxa based on full mitochondrial cytochrome b DNA sequences. Notornis 56 (2): 82-94.
Chandra A., & Huff D. 2007. Salmacisia, a new genus of Tilletiales: reclassification of Tilletia buchloëana causing induced hermaphroditism in buffalograss. Mycologia, 100(1): 81-93.
Chang E.S., Neuhof M., Rubinstein N., Diamant A., Philippe H., Huchon D., & Cartwright P. 2015. Genomic insights into the evolutionary origin of Myxozoa within Cnidaria. Proceedings of the National Academy of Sciences of the United States of America, .
Charlton N., Craven K., Afkhami M., Hall B., Swoboda G., Ghimire S.R., & Young C. 2012. Genetic diversity in epichloid endophytes of Bromus laevipes provides evidence for independent hybridization events. Molecular Ecology, .
No link provided! Try Google Scholar or
Charlton, Nikki D., Kelly D. Craven, Shipra Mittal, Andrew A. Hopkins, and Carolyn A. Young. "Epichloë canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis)." Mycologia 104, no. 5 (2012): 1187-1199.
Chaverri P., Gazis R., & Samuels G.J. 2011. Trichoderma amazonicum, a new endophytic species on Hevea brasiliensis and H. guianensis from the Amazon basin. Mycologia103 (1): 139-151 .
Chaverri P., Samuels G., & Stewart E. 2000. Hypocrea virens sp. nov., the teleomorph of Trichoderma virens. Mycologia, 93(6): 1113-1124.
Chaverri, Priscila, Joseph F. Bischoff, Harry C. Evans, and Kathie T. Hodge. "Regiocrella, a new entomopathogenic genus with a pycnidial anamorph and its phylogenetic placement in the Clavicipitaceae." Mycologia 97, no. 6 (2005): 1225-1237.
Chaverri, Priscila, and Gary J. Samuels. "Evolution of habitat preference and nutrition mode in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology." Evolution 67.10 (2013): 2823-2837.
Chaves, Jaime A., José R. Hidalgo, John Klicka. 2013. Biogeography and evolutionary history of the Neotropical genus Saltator (Aves: Thraupini). Journal of Biogeography 40 (11): 2180-2190.
Che-Huang Tung, Yu-Rong Cheng, Ching-Yi Lin, Ju-Shey Ho, Chih-Horng Kuo, Jr-Kai Yu, Yi-Hsien Su, 2014, 'A New Copepod With Transformed Body Plan and Unique Phylogenetic Position Parasitic in the Acorn Worm Ptychodera flava', The Biological Bulletin, vol. 226, no. 1, pp. 69-80
Chen J., Cui B., & Dai Y.C. 2016. Global diversity and molecular systematics of Wrightoporia s.l. (Russulales, Basidiomycota). Persoonia, 37: 21-36.
Chen, Wei-Jen, Sébastien Lavoué, and Richard L. Mayden. 2013. Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution 67 (8): 2218–2239.
Chesser, R. Terry, Carol K. L. Yeung, Cheng-Te Yao, Xiu-Hua Tian, Shou-Hsien Li. 2010. Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA. Zootaxa 2603: 53-60.
Cho, S., Zwick A., Regier J., Mitter C., Cummings M.P., Yao J., Du Z., Zhao H., Kawahara A.Y., Weller S.J., Davis D.R., Baixeras J., Brown J.W., & Parr C. 2011. Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?. Systematic Biology 60 (6): 782-796.
Chodon Sass, William J.D. Iles, Craig F. Barrett, Selena Y. Smith, Chelsea D. Specht, 2016, 'Revisiting the Zingiberales: using multiplexed exon capture to resolve ancient and recent phylogenetic splits in a charismatic plant lineage', PeerJ, vol. 4, p. e1584
Chris J. Law, Graham J. Slater, Rita S. Mehta, 2017, 'Lineage Diversity and Size Disparity in Musteloidea: Testing Patterns of Adaptive Radiation Using Molecular and Fossil-Based Methods', Systematic Biology
Christin, P.-A., Sage, T. L., Edwards, E. J., gburn, R. M., Khoshravesh, R., & Sage, R. F. 2011. Complex evolutionary transitions and the significance of c(3)-c(4) intermediate forms of photosynthesis in Molluginaceae. Evolution 65: 643-660.
Christina D. Moon, Christopher O. Miles, Ulla Jarlfors, Christopher L. Schardl, 2002, 'The Evolutionary Origins of Three New Neotyphodium Endophyte Species from Grasses Indigenous to the Southern Hemisphere', Mycologia, vol. 94, no. 4, p. 694
Chuan Ma, Yeying Wang, Chao Wu, Le Kang, Chunxiang Liu, 2014, 'The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera', BMC Genomics, vol. 15, no. 1, p. 1156
Chung, K. S., Hipp, A. L., & Roalson, E. H. (2012). Chromosome number evolves independently of genome size in a clade with nonlocalized centromeres (Carex: Cyperaceae). Evolution, 66(9), 2708-2722.
Cibois, Alice, Jean-Claude Thibault, Céline Bonillo, Christopher E. Filardi, Dick Watling, Eric Pasquet. 2014. Phylogeny and biogeography of the fruit doves (Aves: Columbidae). Molecular Phylogenetics and Evolution 70: 442-453.
Claramunt, Santiago, Joel Cracraft. 2015. A new time tree reveals Earth historys imprint on the evolution of modern birds. Science Advances 1 (11): e1501005-e1501005
Clark J., Wagner W., & Roalson E. 2009. Patterns of diversification and ancestral range reconstruction in the Southeast Asian-Pacific angiosperm lineage Cyrtandra (Gesneriaceae). Molecular Phylogenetics and Evolution, 53(3): 982-994.
Clarkson, J. J., Knapp, S., Garcia, V. F., Olmstead, R. G., Leitch, A. R., & Chase, M. W. (2004). Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. Molecular phylogenetics and evolution, 33(1), 75-90.
Clement W., & Donoghue M. 2011. Dissolution of Viburnum section Megalotinus (Adoxaceae) of Southeast Asia and its implications for morphological evolution and biogeography. International Journal of Plant Sciences, 172(4): 559-573.
Coelho G., Silveira A.D., Antoniolli Z.I., & Yurchenko E. 2016. Tropicoporus stratificans sp. nov. (Hymenochaetales, Basidiomycota) from southern Brazil. Phytotaxa, 245(2): 144-152.
Coetzee M., Wingfield B., Bloomer P., Ridley G., & Wingfield M.J. 2003. Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia. Mycologia, 95(2): 285-293.
Colangelo, P., A.A. Bannikova, B. Kryštufek, V.S. Lebedev, F. Annesi, E. Capanna, A. Loy. 2010. Molecular systematics and evolutionary biogeography of the genus Talpa (Soricomorpha: Talpidae). Molecular Phylogenetics and Evolution 55 (2): 372-380.
Collado, Javier, Gonzalo Platas, Gerald F. Bills, Ángela Basilio, Francisca Vicente, J. Rubén Tormo, Pilar Hernández, M. Teresa Díez, and Fernando Peláez. "Studies on Morinia: Recognition of Morinia longiappendiculata sp. nov. as a new endophytic fungus, and a new circumscription of Morinia pestalozzioides." Mycologia 98, no. 4 (2006): 616-627.
Collevatti, R., Colli G., Giugliano L., Werneck F., & Werneck F. 2008. Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology 18 (2): 262-278.
Cooke D., Drenth A., Duncan J., Wagels G., & Brasier C. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology, 30(1): 17-32.
Corl, Ammon, Hans Ellegren. 2013. Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution 67 (2): 358-366
Costea M., Garcia I., Docksteder K., & Stefanovic S. 2013. More problems despite bigger flowers: systematics of Cuscuta tinctoria clade (subgenus Grammica, Convolvulaceae) with description of six new species. Systematic Botany.
Couch B., & Kohn L. 2002. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia, 94(4): 683-693.
Coughenour J., Simmons M., Lombardi J., & Cappa J. 2010. Phylogeny of Celastraceae subfamily Salacioideae and tribe Lophopetaleae Inferred from Morphological Characters and Nuclear and Plastid Genes. Systematic Botany, 35(2): 358-367
Cox, Cymon J., Bernard Goffinet, Norman J. Wickett, Sandra B. Boles, and A. Jonathan Shaw. 2010. Moss diversity: a molecular phylogenetic analysis of genera. Phytotaxa 9: 175-195.
No link provided! Try Google Scholar or
Crawford, N. G., B. C. Faircloth, J. E. McCormack, R. T. Brumfield, K. Winker, T. C. Glenn. 2012. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biology Letters 8 (5): 783-786.
Crous P., Decock C., & Schoch C.L. 2001. Xenocylindrocladium guianense and X. subverticillatum, two new species of hyphomycetes from plant debris in the tropics. Mycoscience, 42: 559-566.
Crous P., Groenewald J., & Hill C. 2002. Cylindrocladium pseudonaviculatum sp. nov. from New Zealand, and new Cylindrocladium records from Vietnam. Sydowia, 54: 23-33.
No link provided! Try Google Scholar or
Crous P., Groenewald J., Risede J., Simoneau P., & Hyde K. 2006. Calonectria species and their Cylindrocladium anamorphs: species with clavate vesicles. Studies in Mycology, 55(1): 213-226.
Cushing, Paula E., Matthew R. Graham, Lorenzo Prendini, Jack O. Brookhart. 2015. A multilocus molecular phylogeny of the endemic North American camel spider family Eremobatidae (Arachnida: Solifugae). Molecular Phylogenetics and Evolution 92: 280-293
Cusimano N., Bogner J., Mayo S., Wong S.Y., Hesse M., Hetterscheid W., Keating R.C., & French J. 2011. Relationships within the Araceae: comparison of morphological patterns with molecular phylogenies. American Journal of Botany, 98(4), 654-668.
Dadheech P., Ballot A., Casper P., Kotut K., Novelo E., Lemma B., Pr?schold T., & Krienitz L. 2010. Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences. Phycologia, 49(4): 361-372.
Dai, Yu-Cheng, Zheng Wang, Manfred Binder, and David S. Hibbett. "Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes." Mycologia 98, no. 4 (2006): 584-592.
Dana Carrison-Stone, Robert Van Syoc, Gary Williams, Brian Simison, 2013, 'Two new species of the gorgonian inhabiting barnacle, Conopea (Crustacea, Cirripedia, Thoracica), from the Gulf of Guinea', ZooKeys, vol. 270, pp. 1-20
Daniela Campanella, Lily C. Hughes, Peter J. Unmack, Devin D. Bloom, Kyle R. Piller, Guillermo Ortí, 2015, 'Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria)', Molecular Phylogenetics and Evolution, vol. 86, pp. 8-23
Dantas, Sidnei M., Jason D. Weckstein, John M. Bates, Niels K. Krabbe, Carlos Daniel Cadena, Mark B. Robbins, Eugenio Valderrama, Alexandre Aleixo. 2016. Molecular systematics of the new world screech-owls (Megascops: Aves, Strigidae): biogeographic and taxonomic implications. Molecular Phylogenetics and Evolution 94: 626-634
David Alors, H. Thorsten Lumbsch, Pradeep K. Divakar, Steven D. Leavitt, Ana Crespo, 2016, 'An Integrative Approach for Understanding Diversity in the Punctelia rudecta Species Complex (Parmeliaceae, Ascomycota)', PLOS ONE, vol. 11, no. 2, p. e0146537
David Maddison, 2014, 'An unexpected clade of South American ground beetles (Coleoptera, Carabidae, Bembidion)', ZooKeys, vol. 416, pp. 113-155
David T. Drumm, 2010, 'Phylogenetic Relationships of Tanaidacea (Eumalacostraca: Peracarida) Inferred from Three Molecular Loci', Journal of Crustacean Biology, vol. 30, no. 4, pp. 692-698
David John Rees, Christoph Noever, Jens Thorvald Høeg, Anders Ommundsen, Henrik Glenner, 2014, 'On the Origin of a Novel Parasitic-Feeding Mode within Suspension-Feeding Barnacles', Current Biology, vol. 24, no. 12, pp. 1429-1434
Davis, C. C., & Anderson, W. R. (2010). A complete generic phylogeny of Malpighiaceae inferred from nucleotide sequence data and morphology. American journal of botany, 97(12), 2031-2048.
Delgado-Salinas, A., Bibler, R., & Lavin, M. (2006). Phylogeny of the genus Phaseolus (Leguminosae): a recent diversification in an ancient landscape. Systematic Botany, 31(4), 779-791.
Delsuc, Frédéric, Georgia Tsagkogeorga, Nicolas Lartillot, andHervé Philippe. 2008. Additional molecular support for the new chordate phylogeny. Genesis 46 (11): 592-604.
Delsuc, Frédéric, Gillian C. Gibb, Melanie Kuch, Guillaume Billet, Lionel Hautier, John Southon, Jean-Marie Rouillard, Juan Carlos Fernicola, Sergio F. Vizcaíno, Ross D.E. MacPhee, Hendrik N. Poinar. 2016. The phylogenetic affinities of the extinct glyptodonts. Current Biology 26 (4): R155-R156
Delsuc, Frédéric, Mariella Superina, Marie-Ka Tilak, Emmanuel J.P. Douzery, Alexandre Hassanin. 2012. Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos. Molecular Phylogenetics and Evolution 62 (2): 673-680.
Deng J., Drew B.T., Mavrodiev E.V., Gitzendanner M.A., Soltis P., & Soltis D. 2014. Saxifragaceae: Phylogeny, divergence times, and historical biogeography. Molecular Phylogentics and Evolution, .
Dentinger B., & Mclaughlin D. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia, 98(5): 746-762.
Derryberry, E.P., Claramunt S., Derryberry G.E., Chesser R.T., Cracraft J., Aleixo A., Perez-eman J., Remsen J., and Brumfield R. 2011. Lineage diversification and morphological evolution in a large-scale continental radiation: the Neotropical ovenbirds and woodcreepers (Aves: Furnariidae). Evolution 65 (10): 2973-2986.
Devos, N., Barker, N. P., Nordenstam, B., & Mucina, L. (2010). A multi-locus phylogeny of Euryops (Asteraceae, Senecioneae) augments support for the" Cape to Cairo" hypothesis of floral migrations in Africa. Taxon, 59(1), 57-67.
Devos, N., Raspé, O., Oh, S. H., Tyteca, D., & Jacquemart, A. L. (2006). The evolution of Dactylorhiza (Orchidaceae) allotetraploid complex: insights from nrDNA sequences and cpDNA PCR-RFLP data. Molecular Phylogenetics and Evolution, 38(3) 767–778.
Dietrich, C. H. 1994. Systematics of the leafhopper genus Draeculacephala (Homoptera: Cicadellidae). Transactions of the American Entomological Society 120: 87-112.
Dohrmann, M., Janussen D., Reitner J., Collins A., & Woerheide G. 2008. Phylogeny and evolution of glass sponges (Porifera, Hexactinellida). Systematic Biology 57 (3): 388-405.
Dohrmann, M., Janussen D., Reitner J., Collins A., and Woerheide G. 2009. Phylogeny of glass sponges (Porifera, Hexactinellida): monophyly of Lyssacinosida and position of additional taxa. Molecular Phylogenetics and Evolution 57 (3): 388-405.
Donne-Goussé, Carole, Vincent Laudet, Catherine Hänni. 2002. A molecular phylogeny of anseriformes based on mitochondrial DNA analysis. Molecular Phylogenetics and Evolution 23 (3): 339-356
Dor, Roi, Rebecca J. Safran, Frederick H. Sheldon, David W. Winkler, Irby J. Lovette. 2010. Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex. Molecular Phylogenetics and Evolution 56 (1): 409-418.
Dos Remedios, Natalie, Patricia L.M. Lee, Terry Burke, Tamás Székely, Clemens Küpper. 2015. North or south? Phylogenetic and biogeographic origins of a globally distributed avian clade. Molecular Phylogenetics and Evolution 89:151-159.
Douanla-meli C., & Langer E. 2008. Phylogenetic relationship of Marasmius mbalmayoensis sp. nov. to the the tropical African Marasmius bekolacongoli complex based on nuc-LSU rDNA sequences. Mycologia, 100(3): 445-454.
Downie, S. R., Katz-Downie, D. S., & Spalik, K. (2000). A phylogeny of Apiaceae tribe Scandiceae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany, 87(1), 76-95.
Drew, B. T., & Sytsma, K. J. (2012). Phylogenetics, biogeography, and staminal evolution in the tribe Mentheae (Lamiaceae). American Journal of Botany, 99(5), 933-953.
Drew, Bryan T., Kenneth J. Sytsma. 2013. The South American radiation of Lepechinia (Lamiaceae): phylogenetics, divergence times and evolution of dioecy. Botanical Journal of the Linnean Society 171 (1): 171-190.
Driscoll, H. E., & Barrington, D. S. (2007). Origin of Hawaiian Polystichum (Dryopteridaceae) in the context of a world phylogeny. American Journal of Botany, 94(8), 1413-1424.
Drummond, C. S., Eastwood, R. J., Miotto, S. T., & Hughes, C. E. (2012). Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling. Systematic Biology 61(3), 443-460.
Du M., Schardl C., Nuckles E., & Vaillancourt L. 2005. Using Mating-Type Gene Sequences for Improved Phylogenetic Resolution of Colletotrichum Species Complexes. Mycologia, 97: 641-658.
Dufort, Matthew J. 2015. An augmented supermatrix phylogeny of the avian family Picidae reveals uncertainty deep in the family tree. Molecular Phylogenetics and Evolution
Dumbacher, J. P., Deiner, K., Thompson, L., & Fleischer, R. C. (2008). Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds. Molecular Phylogenetics and Evolution, 49(3), 774-781.
Dumbacher, J., Pratt, T.K., Fleischer, R.C. 2003. Phylogeny of the owlet-nightjars (Aves: Aegothelidae) based on mitochondrial DNA sequence. Molecular Phylogenetics and Evolution 29 (3): 540-549.
Dunn, C., Pugh P., & Haddock S. 2005. Molecular phylogenetics of the Siphonophora (Cnidaria), with implications for the evolution of functional specialization. Systematic Biology 54 (6): 916-935.
E. Braga, R. Zardoya, A. Meyer, J. Yen, 1999, 'Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida)', Marine Biology, vol. 133, no. 1, pp. 79-90
E. Hajdu, T. S. de Paula, N. E. Redmond, B. Cosme, A. G. Collins, G. Lobo-Hajdu, 2013, 'Mycalina: Another Crack in the Poecilosclerida Framework', Integrative and Comparative Biology, vol. 53, no. 3, pp. 462-472
EDWIN SCHOLES III, 2008, 'Evolution of the courtship phenotype in the bird of paradise genus Parotia (Aves: Paradisaeidae): homology, phylogeny, and modularity', Biological Journal of the Linnean Society, vol. 94, no. 3, pp. 491-504
Eckert, A. J., & Hall, B. D. (2006). Phylogeny, historical biogeography, and patterns of diversification for< i> Pinus</i>(Pinaceae): Phylogenetic tests of fossil-based hypotheses. Molecular Phylogenetics and Evolution, 40(1), 166-182.
Eiji Tanaka, Chihiro Tanaka, 2008, 'Phylogenetic study of clavicipitaceous fungi using acetaldehyde dehydrogenase gene sequences', Mycoscience, vol. 49, no. 2, pp. 115-125
Eklof, J., Pleijel F., & Sundberg P. 2007. Phylogeny of benthic Phyllodocidae (Polychaeta) based on morphological and molecular data. Molecular Phylogenetics and Evolution 45 (1): 261-271.
Ellison N., Liston A., Steiner J., Williams W., & Taylor N. 2006. Molecular phylogenetics of the clover genus (Trifolium--Leguminosae). Molecular Phylogenetics and Evolution, 39(3): 688-705.
Endo M., Hatakeyama S., Harada Y., & Tanaka K. 2008. Description of a coelomycete Ciliochorella castaneae newly found in Japan, and notes on the distribution and phylogeny of Ciliochorella. Nippon Kingakukai Kaiho, v. 49(2) p. 115-120
Eric R.L. Gordon, Christiane Weirauch, 2016, 'Efficient capture of natural history data reveals prey conservatism of cryptic termite predators', Molecular Phylogenetics and Evolution, vol. 94, pp. 65-73
Eric Robert Lucien Gordon, Quinn McFrederick, Christiane Weirauch, 2016, 'Phylogenetic Evidence for Ancient and Persistent Environmental Symbiont Reacquisition in Largidae (Hemiptera: Heteroptera)', Applied and Environmental Microbiology, vol. 82, no. 24, pp. 7123-7133
Ericson, Per GP, Seraina Klopfstein, Martin Irestedt, Jacqueline MT Nguyen and Johan AA Nylander. 2014. Dating the diversification of the major lineages of Passeriformes (Aves). BMC Evolutionary Biology, 14(8).
Estefanía Rodríguez, Marcos S. Barbeitos, Mercer R. Brugler, Louise M. Crowley, Alejandro Grajales, Luciana Gusmão, Verena Häussermann, Abigail Reft, Marymegan Daly, 2014, 'Hidden among Sea Anemones: The First Comprehensive Phylogenetic Reconstruction of the Order Actiniaria (Cnidaria, Anthozoa, Hexacorallia) Reveals a Novel Group of Hexacorals', PLoS ONE, vol. 9, no. 5, p. e96998
Evgeny V. Mavrodiev, Matthew A. Gitzendanner, Andre K. Calaminus, Riccardo M. Baldini, Pamela S. Soltis, Douglas E. Soltis. 2012. Molecular phylogeny of Tragopogon L. (Asteraceae) based on seven nuclear loci (Adh, GapC, LFY, AP3, PI, ITS, and ETS). Webbia 67(2): 111-137. 2012.
F. Santini, M. T. T. Nguyen, L. Sorenson, T. B. Waltzek, J. W. Lynch Alfaro, J. M. Eastman, M. E. Alfaro, 2013, 'Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae)', Journal of Evolutionary Biology, vol. 26, no. 5, pp. 1003-1018
Fabre, Pierre-Henri, Lionel Hautier, Dimitar Dimitrov, Emmanuel J P Douzery. 2012. A glimpse on the pattern of rodent diversification: a phylogenetic approach. BMC Evolutionary Biology 12 (1): 88.
Fain, M., Krajewski C., & Houde P. 2007. Phylogeny of "core Gruiformes" (Aves: Grues) and resolution of the Limpkin-Sungrebe problem. Molecular Phylogenetics and Evolution 43 (2): 515-529.
Farr, David, and Gonzales-MERCK Platas. "Hydropisphaera fungicola Rossman, Farr & Newcombe, sp. nov." Fungal Planet 24 (2008): 1-2.
No link provided! Try Google Scholar or
Fehlberg, S. D., & Ranker, T. A. (2007). Phylogeny and biogeography of Encelia (Asteraceae) in the sonoran and peninsular deserts based on multiple DNA sequences. Systematic Botany, 32(3), 692-699.
Felice Driver, Richard J. Milner, John W.H. Trueman, 2000, 'A taxonomic revision of Metarhizium based on a phylogenetic analysis of rDNA sequence data', Mycological Research, vol. 104, no. 2, pp. 134-150
Felipe Zapata, Freya E. Goetz, Stephen A. Smith, Mark Howison, Stefan Siebert, Samuel H. Church, Steven M. Sanders, Cheryl Lewis Ames, Catherine S. McFadden, Scott C. France, Marymegan Daly, Allen G. Collins, Steven H. D. Haddock, Casey W. Dunn, Paulyn Cartwright, 2015, 'Phylogenomic Analyses Support Traditional Relationships within Cnidaria', PLOS ONE, vol. 10, no. 10, p. e0139068
Fiaschi, P., & Plunkett, G. M. (2011). Monophyly and phylogenetic relationships of Neotropical Schefflera (Araliaceae) based on plastid and nuclear markers. Systematic Botany, 36(3), 806-817.
Filip Husník, Tomáš Chrudimský, Václav Hypša, 2011, 'Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches', BMC Biology, vol. 9, no. 1, p. 87
Filipowicz N.H., & Renner S.S. 2012. Brunfelsia (Solanaceae): A genus evenly divided between South America and radiations on Cuba and other antillean islands. Molecular Phylogenetics and Evolution. 64: 1-11.
Fior S., Li M., Oxelman B., Viola R., Hodges S.A., Ometto L., & Varotto C. 2013. Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions. New Phytologist, 198: 579-592.
Fiore-donno A., Kamono A., Chao E., Fukui M., & Cavalier-smith T. 2010. Invalidation of Hyperamoeba by transferring its species to other genera of Myxogastria. Journal of Eukaryotic Microbiology, 57(2): 189-196.
Fishbein, M., Chuba, D., Ellison, C., Mason-Gamer, R. J., & Lynch, S. P. (2011). Phylogenetic relationships of Asclepias (Apocynaceae) inferred from non-coding chloroplast DNA sequences. Systematic Botany, 36(4), 1008-1023.
Fiz, O., Vargas, P., Alarcon, M. L., & Aldasoro, J. J. (2006). Phylogenetic relationships and evolution in Erodium (Geraniaceae) based on trnL-trnF sequences. Systematic Botany, 31(4), 739-763.
Floudas, Dimitrios, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez et al. "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes." Science 336, no. 6089 (2012): 1715-1719.
Forest, F., Chase, M. W., Persson, C., Crane, P. R., & Hawkins, J. A. (2007). The role of biotic and abiotic factors in evolution of ant dispersal in the milkwort family (Polygalaceae). Evolution, 61(7), 1675-1694.
Forrest L., Davis E., Long D., Crandall-stotler B., Clark A., & Hollingsworth M. 2006. Unraveling the evolutionary history of the liverworts (Marchantiophyta): multiple taxa, genomes and analyses. The Bryologist, 109(3): 303-334.[303:UTEHOT]2.0.CO;2
Forrest, L. L., Hughes, M., & Hollingsworth, P. M. (2005). A phylogeny of Begonia using nuclear ribosomal sequence data and morphological characters. Systematic botany, 30(3), 671-682.
Foster, Charles S. P., Hervé Sauquet, Marlien van der Merwe, Hannah McPherson, Maurizio Rossetto, Simon Y. W. Ho. 2016. Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale. Systematic Biology, p. syw086
Frederik Leliaert, Juan M Lopez-Bautista, 2015, 'The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin', BMC Genomics, vol. 16, no. 1
Friar E., Prince L., Roalson E., Mcglaughlin M., Cruse-sanders J., Porter J., & Degroot S. 2006. Ecological speciation in the East Maui-endemic Dubautia (Asteraceae) species. Evolution, 60(9), 1777-1792.
Friederike Woog, Michael Wink, Eskandar Rastegar-Pouyani, Javier Gonzalez, Barbara Helm, 2008, 'Distinct taxonomic position of the Madagascar stonechat (Saxicola torquatus sibilla) revealed by nucleotide sequences of mitochondrial DNA', Journal of Ornithology, vol. 149, no. 3, pp. 423-430
Friedman, M., B. P. Keck, A. Dornburg, R. I. Eytan, C. H. Martin, C. D. Hulsey, P. C. Wainwright, T. J. Near. 2013. Molecular and fossil evidence place the origin of cichlid fishes long after Gondwanan rifting. Proceedings of the Royal Society B: Biological Sciences 280 (1770): 20131733
Fritsch, P. W., & Cruz, B. C. (2012). Phylogeny of Cercis based on DNA sequences of nuclear ITS and four plastid regions: Implications for transatlantic historical biogeography. Molecular Phylogenetics and Evolution, 62(3), 816-825.
Fritsch, P. W., Cruz, B. C., Almeda, F., Wang, Y., & Shi, S. (2006). Phylogeny of Symplocos based on DNA sequences of the chloroplast trnC-trnD intergenic region. Systematic botany, 31(1), 181-192.
Fuchs, Jérôme, Jan I. Ohlson, Per G. P. Ericson, Eric Pasquet. 2007. Synchronous intercontinental splits between assemblages of woodpeckers suggested by molecular data. Zoologica Scripta 36 (1): 11-25
Fuchs, Jérôme, Jeff A. Johnson, David P. Mindell. 2012. Molecular systematics of the caracaras and allies (Falconidae: Polyborinae) inferred from mitochondrial and nuclear sequence data. Ibis 154 (3): 520-532.
Fuchs, Jérôme, Steven Chen, Jeff A. Johnson, David P. Mindell. 2011. Pliocene diversification within the South American forest falcons (Falconidae: Micrastur). Molecular Phylogenetics and Evolution 60 (3): 398-407.
Fujii T, Reimer JD (2011) Phylogeny of the highly divergent zoanthid family Microzoanthidae (Anthozoa, Hexacorallia) from the Pacific. Zoologica Scripta 40: 418-431
Fulton, T. L., B. Letts, B. Shapiro. 2012. Multiple losses of flight and recent speciation in steamer ducks. Proceedings of the Royal Society B: Biological Sciences 279 (1737): 2339-2346.
Fulton, T. L., C. Strobeck. 2010. Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line. Proceedings of the Royal Society B: Biological Sciences 277 (1684): 1065-1070.
G. J. van Coller, S. Denman, J. Z. Groenewald, S. C. Lamprecht, P. W. Crous, 2005, ' Characterisation and pathogenicity of Cylindrocladiella spp. associated with root and cutting rot symptoms of grapevines in nurseries ', Australasian Plant Pathology, vol. 34, no. 4, p. 489
Galbany-Casals, M. [et al. 2009], Garcia-Jacas, N, Sáez, L., Benedí, C., & Susanna, A. 2009. Phylogeny, biogeography, and character evolution in Mediterranean, Asiatic and Macaronesian Helichrysum (Asteraceae, Gnaphalieae) inferred from nuclear phylogenetic analyses. Internat. J. Plant Sci. 170: 365-380.
Gao, Feng, Shan Gao, Pu Wang, Laura A. Katz, Weibo Song. 2014. Phylogenetic analyses of cyclidiids (Protista, Ciliophora, Scuticociliatia) based on multiple genes suggest their close relationship with thigmotrichids. Molecular Phylogenetics and Evolution 75: 219-226.
García-Deras, Gabriela M., Nandadevi Cortés-Rodríguez, Magali Honey, Adolfo G. Navarro-sigüenza, Jaime García-Moreno, Blanca E. Hernández-Baños. 2008. Phylogenetic relationships within the genus Cynanthus (Aves: Trochilidae), with emphasis on C. doubledayi. Zootaxa 1742: 61-68.
García–R, Juan C., Gillian C. Gibb, Steve A. Trewick. 2014. Eocene diversification of crown group rails (Aves: Gruiformes: Rallidae). PLoS ONE 9 (10): e109635
Garnatje, T. [et al. 2005], Susanna, A., Garcia-Jacas, N., Vilatersana, R., & Vallès, J. 2005. A first approach to the molecular phylogeny of the genus Echinops (Asteraceae): Sectional delimitation and relationships with the genus Acantholepis Less. Folia Geobot. 40: 407-419/
Gary A. Secor, Viviana Rivera-Varas, Daniela S. Christ, Febina M. Mathew, Mohamed F.R. Khan, Mark Varrelmann, Melvin D. Bolton, 2014, 'Characterization of Fusarium secorum, a new species causing Fusarium yellowing decline of sugar beet in north central USA', Fungal Biology, vol. 118, no. 9-10, pp. 764-775
Gavryushkina, Alexandra, Tracy A. Heath, Daniel T. Ksepka, Tanja Stadler, David Welch, Alexei J. Drummond. 2016. Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, p. syw060
Ge Z., Yang Z., Zhang P., Matheny P., & Hibbett D. 2008. Flammulina species from China inferred by morphological and molecular data. Fungal Diversity, 32: 59-68.
German, D. A. [et al. 2009], Friesen, N., Neuffer, B., Al-Shehbaz, I. A., & Hurka, H. 2009. Contribution to ITS phylogeny of the Brassicaceae, with special reference to some Asian taxa. Plant Syst. Evol. 283: 33-56.
Gernandt D., & Stone J. 1999. Phylogenetic analysis of nuclear ribosomal DNA places the nematode parasite, Drechmeria coniospora, in Clavicipitaceae. Mycologia, 91(6): 993-1000.
Gernandt D.S., Holman G., Campbell C., Parks M., Mathews S., Raubeson L., Liston A., Stockey R., & Rothwell G. 2016. Phylogenetics of extant and fossil Pinaceae: methods for increasing topological stability. Botany, .
Ghebretinsae, A. G., Thulin, M., & Barber, J. C. (2007). Relationships of cucumbers and melons unraveled: molecular phylogenetics of Cucumis and related genera (Benincaseae, Cucurbitaceae). American journal of botany, 94(7), 1256-1266.
Gibb, Gillian C., Fabien L. Condamine, Melanie Kuch, Jacob Enk, Nadia Moraes-Barros, Mariella Superina, Hendrik N. Poinar, Frédéric Delsuc. 2015. Shotgun mitogenomics provides a reference phylogenetic framework and timescale for living Xenarthrans. Molecular Biology and Evolution 33 (3): 621-642
Gibb, Gillian C., Ryan England, Gerrit Hartig, P.A. (Trish) McLenachan, Briar L. Taylor Smith, Bennet J. McComish, Alan Cooper, David Penny. 2015. New Zealand passerines help clarify the diversification of major songbird lineages during the Oligocene. Genome Biology and Evolution 7 (11): 2983-2995.
Gibson, Rosemary, Allan Baker. 2012. Multiple gene sequences resolve phylogenetic relationships in the shorebird suborder Scolopaci (Aves: Charadriiformes). Molecular Phylogenetics and Evolution 64 (1): 66-72
Gillespie E.L., & Kron K.A. 2010. Molecular phylogenetic relationships and a revised classification of the subfamily Ericoideae (Ericaceae). Molecular Phylogenetics and Evolution, 56: 343-354.
Givnish, T. J. , M. H. J. Barfuss, B. V. Ee, R. Riina, K. Schulte, R. Horres, P. A. Gonsiska, R. S. Jabaily, D. M. Crayn, J. A. C. Smith, K. Winter, G. K. Brown, T. M. Evans, B. K. Holst, H. Luther, W. Till, G. Zizka, P. E. Berry, K. J. Sytsma. 2011. Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: Insights from an eight-locus plastid phylogeny. American Journal of Botany 98 (5): 872-895
Givnish, Thomas J., Mercedes Ames, Joel R. McNeal, Michael R. McKain, P. Roxanne Steele, Claude W. dePamphilis, Sean W. Graham, J. Chris Pires, Dennis W. Stevenson, Wendy B. Zomlefer, Barbara G. Briggs, Melvin R. Duvall, Michael J. Moore, J. Michael Heaney, Douglas E. Soltis, Pamela S. Soltis, Kevin Thiele, James H. Leebens-Mack. 2010. Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales 1. Annals of the Missouri Botanical Garden 97 (4): 584-616
Glenner H, Lützen J, Takahashi T (2003) Molecular and morphological evidence for a monophyletic clade of asexually reproducing rhizocephala: Polyascus, new genus (cirripedia). Journal of Crustacean Biology 23, 548-557.
Glenner, Henrik, Martin Bay Hebsgaard. 2006. Phylogeny and evolution of life history strategies of the Parasitic Barnacles (Crustacea, Cirripedia, Rhizocephala). Molecular Phylogenetics and Evolution 41 (3): 528-538.
Goetsch, L., Eckert, A. J., & Hall, B. D. (2005). The molecular systematics of Rhododendron (Ericaceae): a phylogeny based upon RPB2 gene sequences. Systematic Botany, 30(3), 616-626.
Gonzalez, J., H. Düttmann, M. Wink. 2009. Phylogenetic relationships based on two mitochondrial genes and hybridization patterns in Anatidae. Journal of Zoology 279 (3): 310-318.
Gonzalez, Juan-Carlos T., Ben C. Sheldon, Nigel J. Collar, Joseph A. Tobias. 2013. A comprehensive molecular phylogeny for the hornbills (Aves: Bucerotidae). Molecular Phylogenetics and Evolution 67 (2): 468-483.
González D., Rodriguez-carres M., Boekhout T., Stalpers J.A., Kuramae E.E., Nakatani A.K., Vilgalys R., & Cubeta M.A. 2016. Phylogenetic Relationships of Rhizoctonia Fungi within the Cantharellales. Fungal Biology, 120(4): 603-619.
No link provided! Try Google Scholar or
González, D., Vovides, A. P., & Bárcenas, C. (2008). Phylogenetic relationships of the Neotropical genus Dioon (Cycadales, Zamiaceae) based on nuclear and chloroplast DNA sequence data. Systematic Botany, 33(2), 229-236.
Gottlieb A., Giberti G., & Poggio L. 2003. Molecular analyses of the genus Ilex (Aquifoliaceae) in southern South America, evidence from AFLP and ITS sequence data. American Journal of Botany, null.
Graham J. Slater, Jeremy A. Goldbogen, Nicholas D. Pyenson, 2017, 'Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamics', Proceedings of the Royal Society B: Biological Sciences, vol. 284, no. 1855, p. 20170546
Grant, Jessica, Yonas I. Tekle, O. Roger Anderson, David J. Patterson, Laura A. Katz. 2009. Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles. Protist 160 (3): 376-385.
Gravendeel B., Eurlings M., Van den berg C., & Cribb P. 2004. Phylogeny of Pleione (Orchidaceae) and parentage analysis of its wild hybrids based on plastid and nrITS sequences and morphological data. Systematic Botany. (14)50-63
Green, A. F., Ramsey, T. S., & Ramsey, J. (2011). Phylogeny and biogeography of ivies (Hedera spp., Araliaceae), a polyploid complex of woody vines. Systematic Botany, 36(4), 1114-1127.
Groenewald M., Groenewald J., Braun U., & Crous P. 2005. Host range of Cercospora apii and C. beticola, and description of C. apiicola, a novel species from celery. Mycologia, 98: 275-285.
Grubisha L., Trappe J., Molina R., & Spatafora J. 2002. Biology of the ectomycorrhizal genus Rhizopogon. VI. Re-examination of infrageneric relationships inferred from phylogenetic analyses of ITS sequences. Mycologia, 94(4): 607-619.
Gruenstaeudl M., Urtubey E., Jansen R., Samuel R., Barfuss M., & Stuessy T. 2009. Phylogeny of Barnadesioideae (Asteraceae) inferred from DNA sequence data and morphology. Molecular Phylogenetics and Evolution, 51(3): 572-587.
Gruenstaeudl, M., Santos‐Guerra, A., & Jansen, R. K. (2012). Phylogenetic analyses of Tolpis Adans.(Asteraceae) reveal patterns of adaptive radiation, multiple colonization and interspecific hybridization. Cladistics.1 (2012) 1–19
Grum-grzhimaylo A.A., Debets A.J., Van diepeningen A.D., Georgieva M.L., & Bilanenko E.N. 2013. Sodiomyces alkalinus, a new holomorphic alkaliphilic ascomycete within the Plectosphaerellaceae. Persoonia, 31: 147-158.
Gryzenhout M., Myburg H., Rodas C., Wingfield B., & Wingfield M.J. 2006. Aurapex penicillata gen. sp. nov. from native Miconia theaezans and Tibouchina spp. in Colombia. Mycologia, 98: 105-115.
Gryzenhout, M., Myburg H., Wingfield B., & Wingfield M.J. 2006. Cryphonectriaceae (Diaporthales), a new family including Cryphonectria, Endothia, Chrysoporthe and allied genera. Mycologia 98: 239-249.
Grünig C., Duo A., Sieber T., & Holdenrieder O. 2008. Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.l. - Acephala applanata species complex. Mycologia, 100(1): 47-67.
Guillemin M., Akki S., Givernaud T., Mouradi A., Valero M., & Destombe C. 2008. Molecular characterisation and development of rapid molecular methods to identify species of Gracilariaceae from the Atlantic coast of Morocco. Aquatic Botany,Volume 89, Issue 3, October 2008, Pages 324–330,
Guillon, J. M. (2007). Molecular phylogeny of horsetails (Equisetum) including chloroplast atpB sequences. Journal of plant research, 120(4), 569-574.
Guillon, J., Guery L., Hulin V., & Girondot M. 2012. A large phylogeny of turtles (Testudines) using molecular data. Contributions to Zoology 81 (3): 147-158.
Guo, Y.-L., & Ge, S. 2005. Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes. American J. Bot. 92: 1548-1558.
Gómez F., Moreira D., & López-garcía P. 2009. Neoceratium gen. nov., a New Genus for All Marine Species Currently Assigned to Ceratium (Dinophyceae). Protist, 161(1): 35-54.
H. Urbina, R. Frank, M. Blackwell, 2012, 'Scheffersomyces cryptocercus: a new xylose-fermenting yeast associated with the gut of wood roaches and new combinations in the Sugiyamaella yeast clade', Mycologia, vol. 105, no. 3, pp. 650-660
Hackett, S. J., R. T. Kimball, S. Reddy, R. C. K. Bowie, E. L. Braun, M. J. Braun, J. L. Chojnowski, W. A. Cox, K.-L. Han, J. Harshman, C. J. Huddleston, B. D. Marks, K. J. Miglia, W. S. Moore, F. H. Sheldon, D. W. Steadman, C. C. Witt, T. Yuri. 2008. A Phylogenomic Study of Birds Reveals Their Evolutionary History. Science 320 (5884): 1763-1768.
Halleen F., Schroers H., Groenewald J., & Crous P. 2004. Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.). Studies in Mycology, 50: 431-455.
No link provided! Try Google Scholar or
Han, Kin-Lan, Mark B. Robbins, Michael J. Braun. 2010. A multi-gene estimate of phylogeny in the nightjars and nighthawks (Caprimulgidae). Molecular Phylogenetics and Evolution 55 (2): 443-453.
Han, Kui, Yan-Ling Ji, Yong Wang, and Zhi-Wei Wang. "A Neotyphodium endophyte from Festuca myuros L. in Nanjing, China." Mycology 3, no. 3 (2012): 201-209.
No link provided! Try Google Scholar or
Hansen A., Gilbert L., Simpson B., Downie S., Cervi A., & Jansen R. 2006. Phylogenetic Relationships and Chromosome Number Evolution in Passiflora. Systematic Botany, 31(1): 138-150.
Harald Letsch, Brigitte Gottsberger, Jessica L. Ware, 2016, 'Not going with the flow: a comprehensive time-calibrated phylogeny of dragonflies (Anisoptera: Odonata: Insecta) provides evidence for the role of lentic habitats on diversification', Molecular Ecology, vol. 25, no. 6, pp. 1340-1353
Harbaugh, D. T., Oppenheimer, H. L., Wood, K. R., & Wagner, W. L. (2010). Taxonomic revision of the endangered Hawaiian red-flowered sandalwoods (Santalum) and discovery of an ancient hybrid species. Systematic botany, 35(4), 827-838.
Harrington, Richard C., Brant C. Faircloth, Ron I. Eytan, W. Leo Smith, Thomas J. Near, Michael E. Alfaro, Matt Friedman. 2016. Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. BMC Evolutionary Biology 16: 224
Harris, R.B., M.D. Carling, I.J. Lovette. 2014. The influence of sampling design on species tree inference: a new relationship for the New World chickadees (Aves: Poecile). Evolution 68 (2): 501-513.
Harris, Rebecca B., Sharon M. Birks, Adam D. Leaché. 2014. Incubator birds: biogeographical origins and evolution of underground nesting in megapodes (Galliformes: Megapodiidae). Journal of Biogeography doi: 10.1111/jbi.12357
Haugland R., Vesper S., & Harmon S. 2001. Phylogenetic relationships of Memnoniella and Stachybotrys species and evaluation of morphological features for Memnoniella species identification. Mycologia, 93(1): 54-65.
Havill, N. P., Campbell, C. S., Vining, T. F., LePage, B., Bayer, R. J., & Donoghue, M. J. (2008). Phylogeny and biogeography of Tsuga (Pinaceae) inferred from nuclear ribosomal ITS and chloroplast DNA sequence data. Systematic Botany, 33(3), 478-789.
He, Kai, Akio Shinohara, Xue-Long Jiang, Kevin L. Campbell. 2014. Multilocus phylogeny of talpine moles (Talpini, Talpidae, Eulipotyphla) and its implications for systematics. Molecular Phylogenetics and Evolution 70: 513-521.
Hedtke, S.M., Patiny S., & Danforth B. 2013. The bee tree of life: a supermatrix approach to apoid phylogeny and biogeography. BMC Evolutionary Biology 13: 138.
Heenan, P. B., Dawson, M. I., Redmond, D. N., & Wagstaff, S. J. (2005). Relationships of the New Zealand mountain ribbonwoods (Hoheria glabrata and H. lyallii: Malvaceae), based on molecular and morphological data. New Zealand Journal of Botany, 43(2), 527-549.
Heidi Tamm, Kadri Põldmaa, 2013, 'Diversity, host associations, and phylogeography of temperate aurofusarin-producing Hypomyces/Cladobotryum including causal agents of cobweb disease of cultivated mushrooms', Fungal Biology, vol. 117, no. 5, pp. 348-367
Hennequin S., Ebihara A., Ito M., Dubuisson J.-Y. & H. Schneider. 2010. Chromosome number evolution in Hymenophyllum (Hymenophyllaceae), with special reference to the subgenus Hymenophyllum. Molecular Phylogenetics and Evolution 55: 47-59.
Hennequin, S., Ebihara, A., Ito, M., Iwatsuki, K., & Dubuisson, J. Y. (2006). New insights into the phylogeny of the genus Hymenophyllum sl (Hymenophyllaceae): revealing the polyphyly of Mecodium. Systematic botany, 31(2), 271-284.
Henrik Glenner, Jens T. Høeg, Jesper Stenderup, Alexey V. Rybakov, 2010, 'The monophyletic origin of a remarkable sexual system in akentrogonid rhizocephalan parasites: A molecular and larval structural study', Experimental Parasitology, vol. 125, no. 1, pp. 3-12
Henrik Glenner, Philip Francis Thomsen, Alexey V. Rybakov, Bella S. Galil, Jens T. Hoeg, 2008, 'The Phylogeny of Rhizocephalan Parasites of the Genus Heterosaccus using Molecular and Larval Data (Cirripedia: Rhizocephala; Sacculinidae)', Israel Journal of Ecology & Evolution, vol. 54, no. 2, pp. 223-238
Herrera, James P., Liliana M. Dávalos. 2016. Phylogeny and Divergence Times of Lemurs Inferred with Recent and Ancient Fossils in the Tree. Systematic Biology 65 (5): 772-791
Higdon J. W., Bininda-Emonds O. R. P., Beck R. M. D., Ferguson S. H. 2007. Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset. BMC Evolutionary Biology 8: 216.
Hiroki Hata, Atsushi Sogabe, Shinya Tada, Ryohei Nishimoto, Reina Nakano, Nobuhiko Kohya, Hirohiko Takeshima, Ryota Kawanishi, 2017, 'Molecular phylogeny of obligate fish parasites of the family Cymothoidae (Isopoda, Crustacea): evolution of the attachment mode to host fish and the habitat shift from saline water to freshwater', Marine Biology, vol. 164, no. 5
Hiroto Suhara, Shuichi Kurogi, 2015, 'Cantharellus cyphelloides (Cantharellales), a new and unusual species from a Japanese evergreen broad-leaved forest', Mycological Progress, vol. 14, no. 8
Hisayoshi Nozaki, Ryo Matsuzaki, Kayoko Yamamoto, Masanobu Kawachi, Fumio Takahashi, 2015, 'Delineating a New Heterothallic Species of Volvox (Volvocaceae, Chlorophyceae) Using New Strains of “Volvox africanus”', PLOS ONE, vol. 10, no. 11, p. e0142632
Holst-jensen A., Vralstad T., & Schumacher T. 2004. Kohninia linnaeicola - a new genus and species of the Sclerotiniaceae pathogenic to Linnaea borealis. Mycologia, 96: 136-143.
Hooper, Daniel M., Urban Olsson, Per Alström. 2016. The Rusty-tailed Flycatcher (Muscicapa ruficauda; Aves: Muscicapidae) is a member of the genus Ficedula. Molecular Phylogenetics and Evolution 102: 56-61
Hoot, S. B., Taylor, W. C., & Napier, N. S. (2006). Phylogeny and biogeography of Isoëtes (Isoëtaceae) based on nuclear and chloroplast DNA sequence data. Systematic botany, 31(3), 449-460.
Hosner, Peter A. Brant C. Faircloth, Travis C. Glenn, Edward L. Braun, Rebecca T. Kimball. 2015. Avoiding missing data biases in phylogenomic inference: an empirical study in the landfowl (Aves: Galliformes). Molecular Biology and Evolution 33 (4): 1110-1125
Hoy M., & Jeyaprakash A. 2008. First divergence time estimate of spiders, scorpions, mites and ticks (Subphylum: Chelicerata) inferred from mitochondrial phylogeny. Experimental and Applied Acarology, null.
Hsiu-Chin Lin, Gregory A. Kobasov, Benny K.K. Chan, 2016, 'Phylogenetic relationships of Darwin’s “Mr. Arthrobalanus”: The burrowing barnacles (Cirripedia: Acrothoracica)', Molecular Phylogenetics and Evolution
Huang, D., & Roy K. 2013. Anthropogenic extinction threats and future loss of evolutionary history in reef corals. Ecology and Evolution, 3 (5): 1184–1193.
Hunter, R., Webb M., Iliffe T., & Bremer J. 2007. Phylogeny and historical biogeography of the cave-adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and western Atlantic. Journal of Biogeography 35 (1): 65-75.
Hwang, W. S. and Weirauch, C. 2012, 'Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction', PLoS ONE, vol. 7, no. 9, p. e45523
Høeg, JT., Jensen P., Rees D., and Glenner, H. Parasitic barnacles and molecular data in crustacean phylogeny. In: Parasitic Crustacea: State of Knowledge and Future Trends. Edited by Nico Smit and Neil Bruce (Springer press). (2016).
Iole Di Capua, Fulvio Maffucci, Raimondo Pannone, Maria Grazia Mazzocchi, Elio Biffali, Alberto Amato, 2017, 'Molecular phylogeny of Oncaeidae (Copepoda) using nuclear ribosomal internal transcribed spacer (ITS rDNA)', PLOS ONE, vol. 12, no. 4, p. e0175662
Irby J. Lovette, Brynn V. McCleery, Amanda L. Talaba, Dustin R. Rubenstein, 2008, 'A complete species-level molecular phylogeny for the “Eurasian” starlings (Sturnidae: Sturnus, Acridotheres, and allies): Recent diversification in a highly social and dispersive avian group', Molecular Phylogenetics and Evolution, vol. 47, no. 1, pp. 251-260
Ireland H., Kite G., Veitch N., Chase M., Schrire B., Lavin M., & Pennington R. 2010. Biogeographic, ecological, and morphological structure of a phylogenetic analysis of Ateleia (Swartzieae-Leguminosae) derived from combined molecular and morphological/chemical data. Botanical Journal of the Linnean Society, 162(1): 39-53.
Irestedt, Martin, Knud A Jønsson, Jon Fjeldså, Les Christidis, Per GP Ericson. 2009. An unexpectedly long history of sexual selection in birds-of-paradise. BMC Evolutionary Biology 9 (1): 235
Irisarri I., Eernisse D.J., & Zardoya R. 2014. Molecular phylogeny of Acanthochitonina (Mollusca: Polyplacophora: Chitonida): three new mitochondrial genomes, rearranged gene orders and systematics. Journal of Natural History, .
No link provided! Try Google Scholar or
Ishikawa N., Yokoyama J., & Tsukaya H. 2009. Molecular evidence of reticulate evolution in the subgenus Plantago (Plantaginaceae). American Journal of Botany, 96(9): 1627-1635.
J. L. Alves, J. H. C. Woudenberg, L. L. Duarte, P. W. Crous, R. W. Barreto, 2013, 'Reappraisal of the genus Alternariaster (Dothideomycetes)', Persoonia - Molecular Phylogeny and Evolution of Fungi, vol. 31, no. 1, pp. 77-85
J. W. Spatafora, Y. Chang, G. L. Benny, K. Lazarus, M. E. Smith, M. L. Berbee, G. Bonito, N. Corradi, I. Grigoriev, A. Gryganskyi, T. Y. James, K. ODonnell, R. W. Roberson, T. N. Taylor, J. Uehling, R. Vilgalys, M. M. White, J. E. Stajich, 2016, 'A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data', Mycologia, vol. 108, no. 5, pp. 1028-1046
JESSICA L. WARE, ERIK PILGRIM, MICHAEL L. MAY, THOMAS W. DONNELLY, KENNETH TENNESSEN, 2016, 'Phylogenetic relationships of North American Gomphidae and their close relatives', Systematic Entomology, vol. 42, no. 2, pp. 347-358
JULIE FEINSTEIN, XIAOJUN YANG, SHOU-HSIEN LI, 2007, 'Molecular systematics and historical biogeography of the Black-browed Barbet species complex (Megalaima oorti)', Ibis, vol. 150, no. 1, pp. 40-49
Jabaily R.S., & Sytsma K.J. 2010. Phylogenetics of Puya (Bromeliaceae): Placement, Major Lineages, and Evolution of Chilean Species. American Journal of Botany, 97(2): 337-356.
Jaklitsch W.M., & Voglmayr H. 2011. Nectria eustromatica sp. nov., an exceptional species with a hypocreaceous stroma. Mycologia, 103(1): 209-218.
Jaklitsch W.M., Komon M., Kubicek C., & Druzhinina I. 2006. Hypocrea voglmayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea/Trichoderma. Mycologia, null.
Jaklitsch, Walter M., Christian P. Kubicek, and Irina S. Druzhinina. "Three European species of Hypocrea with reddish brown stromata and green ascospores." Mycologia 100, no. 5 (2008): 796-815.
Jaklitsch, Walter M., Monika Komon, Christian P. Kubicek, and Irina S. Druzhinina. "Hypocrea crystalligena sp. nov., a common European species with a white-spored Trichoderma anamorph." Mycologia 98, no. 3 (2006): 499-513.
Janaina Rigonato, Angela D. Kent, Danillo O. Alvarenga, Fernando D. Andreote, Raphael M. Beirigo, Pablo Vidal-Torrado, Marli F. Fiore, 2013, 'Drivers of cyanobacterial diversity and community composition in mangrove soils in south-east Brazil', Environmental Microbiology, vol. 15, no. 4, pp. 1103-1114
Janaina Rigonato, Danillo Oliveira Alvarenga, Fernando Dini Andreote, Armando Cavalcante Franco Dias, Itamar Soares Melo, Angela Kent, Marli Fátima Fiore, 2012, 'Cyanobacterial diversity in the phyllosphere of a mangrove forest', FEMS Microbiology Ecology, vol. 80, no. 2, pp. 312-322
Janet M. Bradford-Grieve, Geoffrey A. Boxshall, Leocadio Blanco-Bercial, 2014, 'Revision of basal calanoid copepod families, with a description of a new species and genus of Pseudocyclopidae', Zoological Journal of the Linnean Society, vol. 171, no. 3, pp. 507-533
Janies, D., Voight, J., Daly, M., (2011) Echinoderm phylogeny including Xyloplax, a progenetic asteroid. Systematic Biology 604 (4): 420-438.
Javier Gonzalez, Michael Wink, 2008, 'Phylogenetic position of the monotypic Des Murs’ Wiretail (Sylviorthorhynchus desmursii, Aves: Furnariidae) based on mitochondrial and nuclear DNA', Journal of Ornithology, vol. 149, no. 3, pp. 393-398
Javier Montenegro, Frederic Sinniger, James Davis Reimer, 2015, 'Unexpected diversity and new species in the sponge-Parazoanthidae association in southern Japan', Molecular Phylogenetics and Evolution, vol. 89, pp. 73-90
Javier Montenegro, Martyn E. Y. Low, James Davis Reimer, 2015, 'The resurrection of the genusBergia(Anthozoa, Zoantharia, Parazoanthidae)', Systematics and Biodiversity, vol. 14, no. 1, pp. 63-73
Jennifer L. Fessler, Mark W. Westneat, 2007, 'Molecular phylogenetics of the butterflyfishes (Chaetodontidae): Taxonomy and biogeography of a global coral reef fish family', Molecular Phylogenetics and Evolution, vol. 45, no. 1, pp. 50-68
Jessica L. Ware, Christopher D. Beatty, Melissa Sánchez Herrera, Steve Valley, Jim Johnson, Cary Kerst, Michael L. May, Gunther Theischinger, 2014, 'The petaltail dragonflies (Odonata: Petaluridae): Mesozoic habitat specialists that survive to the modern day', Journal of Biogeography, vol. 41, no. 7, pp. 1291-1300
Jetz, W., G. H. Thomas, J. B. Joy, K. Hartmann, A. O. Mooers. 2012. The global diversity of birds in space and time. Nature 491 (7424): 444-448
Ji Y. 2012. Propose of a New Variety of Epichloe sylvatica in Native Brachypodium sylvaticum (Huds.) P. Beauv. Grown in Huangshan. Mycology: An International Journal on Fungal Biology, .
No link provided! Try Google Scholar or
Ji Y., Kang Y., Sun X., Wang Z., Yu H., Zhan L., Ji Y., Zhan L., Sun X., Yu H., & Wang Z. 2009. A new stromata-producing Neotyphodium species symbiotic with clonal grass Calamagrostis epigeios (L.) Roth. grown in China. Mycologia, 101 (2): 200-205.
Jobson, R. W. [et al. 2003], Playford, J., Cameron, K. M., & Albert, V. A. 2003. Molecular phylogenetics of Lentibulariaceae inferred from plastid rps16 intron and trnL-F sequences: Implications for character evolution and biogeography. Syst. Bot. 28: 157-171.
Johansen, L. B. (2005). Phylogeny of Orchidantha (Lowiaceae) and the Zingiberales based on six DNA regions. Systematic botany, 30(1), 106-117.
Johansson, Ulf S., Jan Ekman, Rauri C.K. Bowie, Peter Halvarsson, Jan I. Ohlson, Trevor D. Price, Per G.P. Ericson. 2013. A complete multilocus species phylogeny of the tits and chickadees (Aves: Paridae). Molecular Phylogenetics and Evolution 69 (3): 852-860.
John M. Heraty, Roger A. Burks, Astrid Cruaud, Gary A. P. Gibson, Johan Liljeblad, James Munro, Jean-Yves Rasplus, Gerard Delvare, Peter Janšta, Alex Gumovsky, John Huber, James B. Woolley, Lars Krogmann, Steve Heydon, Andrew Polaszek, Stefan Schmidt, D. Chris Darling, Michael W. Gates, Jason Mottern, Elizabeth Murray, Ana Dal Molin, Serguei Triapitsyn, Hannes Baur, John D. Pinto, Simon van Noort, Jeremiah George, Matthew Yoder, 2013, 'A phylogenetic analysis of the megadiverse Chalcidoidea (Hymenoptera)', Cladistics, vol. 29, no. 5, pp. 466-542
Johnson, Jeff A., Joseph W. Brown, Jérôme Fuchs, David P. Mindell, 2016, 'Multi-locus phylogenetic inference among New World Vultures (Aves: Cathartidae)', Molecular Phylogenetics and Evolution, vol. 105, pp. 193-199
Johnson, W.E., Eizirik E., Pecon-slattery J., Murphy W., Antunes A., Teeling E., & O'brien S. 2006. The late Miocene radiation of modern Felidae: a genetic assessment. Science 311(5757): 73-77.
Joseph, Leo, Alicia Toon, Erin E. Schirtzinger, Timothy F. Wright. 2011. Molecular systematics of two enigmatic genera Psittacella and Pezoporus illuminate the ecological radiation of Australo-Papuan parrots (Aves: Psittaciformes). Molecular Phylogenetics and Evolution 59 (3): 675-684.
Juan Carlos Illera, David S. Richardson, Barbara Helm, Juan Carlos Atienza, Brent C. Emerson, 2008, 'Phylogenetic relationships, biogeography and speciation in the avian genus Saxicola', Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 1145-1154
Julia J. Day, Antoine Fages, Katherine J. Brown, Emmanuel J. Vreven, Melanie L. J. Stiassny, Roger Bills, John P. Friel, Lukas Rüber, 2017, 'Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels', Journal of Biogeography
Juslen, Aino, Henry Vare, and Niklas Wikstrom. "Relationships and evolutionary origins of polyploid Dryopteris (Dryopteridaceae) from Europe inferred using nuclear pgiC and plastid trnL-F sequence data." Taxon 60, no. 5 (2011): 1284-1294.
No link provided! Try Google Scholar or
Jérôme Fuchs, Jean-Marc Pons, Steven M Goodman, Vincent Bretagnolle, Martim Melo, Rauri CK Bowie, David Currie, Roger Safford, Munir Z Virani, Simon Thomsett, Alawi Hija, Corinne Cruaud, Eric Pasquet, 2008, 'Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna', BMC Evolutionary Biology, vol. 8, no. 1, p. 197
Jønsson, Knud A., Rauri C. K. Bowie, Robert G. Moyle, Martin Irestedt, Les Christidis, Janette A. Norman, Jon Fjeldså. 2010. Phylogeny and biogeography of Oriolidae (Aves: Passeriformes). Ecography 33 (2): 232-241.
Jønsson, Knud Andreas, Pierre-Henri Fabre, Jonathan D. Kennedy, Ben G. Holt, Michael K. Borregaard, Carsten Rahbek, Jon Fjeldså. 2016. A supermatrix phylogeny of corvoid passerine birds (Aves: Corvides). Molecular Phylogenetics and Evolution 94: 87-94.
K. M. Bayha, M. N. Dawson, A. G. Collins, M. S. Barbeitos, S. H. D. Haddock, 2010, 'Evolutionary Relationships Among Scyphozoan Jellyfish Families Based on Complete Taxon Sampling and Phylogenetic Analyses of 18S and 28S Ribosomal DNA', Integrative and Comparative Biology, vol. 50, no. 3, pp. 436-455
K. M. Kozak, N. Wahlberg, A. F. E. Neild, K. K. Dasmahapatra, J. Mallet, C. D. Jiggins, 2015, 'Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies', Systematic Biology, vol. 64, no. 3, pp. 505-524
K.M. Abrams, M.T. Guzik, S.J.B. Cooper, W.F. Humphreys, R.A. King, J.-L. Cho, A.D. Austin, 2012, 'What lies beneath: Molecular phylogenetics and ancestral state reconstruction of the ancient subterranean Australian Parabathynellidae (Syncarida, Crustacea)', Molecular Phylogenetics and Evolution, vol. 64, no. 1, pp. 130-144
K.M. Hultgren, J.J. Stachowicz, 2008, 'Molecular phylogeny of the brachyuran crab superfamily Majoidea indicates close congruence with trees based on larval morphology', Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 986-996
K.Y. Ma, T.-Y. Chan, K.H. Chu, 2009, 'Phylogeny of penaeoid shrimps (Decapoda: Penaeoidea) inferred from nuclear protein-coding genes', Molecular Phylogenetics and Evolution, vol. 53, no. 1, pp. 45-55
Ka Yan Ma, Tin-Yam Chan, Ka Hou Chu, 2011, 'Refuting the six-genus classification of Penaeus s.l. (Dendrobranchiata, Penaeidae): a combined analysis of mitochondrial and nuclear genes', Zoologica Scripta, vol. 40, no. 5, pp. 498-508
Kaliszewska Z.A., Lohman D.J., Sommer K., Adelson G., Rand D.B., Mathew J., Talavera G., & Pierce N. 2015. When caterpillars attack: Biogeography and life-history evolution of the Miletinae (Lepidoptera: Lycaenidae). Evolution, .
Kari Roesch Goodman, Neal L. Evenhuis, Pavla Bartošová-Sojková, Patrick M. O’Grady, 2014, 'Diversification in Hawaiian long-legged flies (Diptera: Dolichopodidae: Campsicnemus): Biogeographic isolation and ecological adaptation', Molecular Phylogenetics and Evolution, vol. 81, pp. 232-241
Kawahara AY, Mignault AA, Regier JC, Kitching IJ, Mitter C (2009) 'Phylogeny and Biogeography of Hawkmoths (Lepidoptera: Sphingidae): Evidence from Five Nuclear Genes., PLoS ONE, vol. 4, no. 5, p. e5719
Kawahara, A. Y., J. W. Breinholt. 2014. Phylogenomics provides strong evidence for relationships of butterflies and moths. Proceedings of the Royal Society B: Biological Sciences 281 (1788): 20140970-20140970.
Kayal, E., Roure, B., Philippe, H., Collins, A. G., & Lavrov, D. V. 2013. Cnidarian phylogenetic relationships as revealed by mitogenomics. BMC Evolutionary Biology 13 (1): 5.
Kennedy A.H., & Watson L. 2010. Species Delimitations and Phylogenetic Relationships within in the Fully Myco-heterotrophic Hexalectris (Orchidaceae). Systematic Botany, 35(1): 64-76.
Kennedy, M., S.A. Taylor, P. Nádvorník, H. Spencer. 2013. The phylogenetic relationships of the extant pelicans inferred from DNA sequence data. Molecular Phylogenetics and Evolution 66 (1): 215-222.
Kennedy, Martyn, Hamish G. Spencer. 2014. Classification of the cormorants of the world. Molecular Phylogenetics and Evolution 79: 249-257.
Kerrigan R., Callac P., & Parra L. 2008. New and rare taxa in Agaricus section Bivelares (Duploannulati). Mycologia, 100(6): 876-892.
Kimball, Rebecca T., Colette M. St. Mary, Edward L. Braun. 2011. A macroevolutionary perspective on multiple sexual traits in the Phasianidae (Galliformes). International Journal of Evolutionary Biology 2011: 1-16.
Kiontke K., Gavin N., Raynes Y., Roehrig C., Piano F., & Fitch D. 2004. Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proceedings of the National Academy of Sciences of the United States of America 101 (24): 9003-9008.
Kissling, J., & Barrett, S. C. (2013). Variation and evolution of herkogamy in Exochaenium (Gentianaceae): implications for the evolution of distyly. Annals of botany, 112(1), 95-102.
Klich, M. A., J. W. Cary, S. B. Beltz, and C. A. Bennett. "Phylogenetic and morphological analysis of Aspergillus ochraceoroseus." Mycologia 95, no. 6 (2003): 1252-1260.
Klicka, John, F. Keith Barker, Kevin J. Burns, Scott M. Lanyon, Irby J. Lovette, Jaime A. Chaves, Robert W. Bryson. 2014. A comprehensive multilocus assessment of sparrow (Aves: Passerellidae) relationships. Molecular Phylogenetics and Evolution 77: 177–182.
Kling, Hedy J., H. Dail Laughinghouse IV, Jan Šmarda, Jiří Komárek, Judy Acreman, Karl Bruun, Sue B. Watson & Feng Chen. 2012. A new red colonial Pseudanabaena (Cyanoprokaryota, Oscillatoriales) from North American large lakes. Fottea, Olomouc, 12 (2): 327–339.
Knud A. Jønsson, Rauri C. K. Bowie, Robert G. Moyle, Les Christidis, Christopher E. Filardi, Janette A. Norman, Jon Fjeldså, 2008, ' Molecular phylogenetics and diversification within one of the most geographically variable bird species complexes Pachycephala pectoralis / melanura ', Journal of Avian Biology, vol. 39, no. 5, pp. 473-478
Kocarek, P., John V., & Hulva P. 2013. When the body hides the ancestry: phylogeny of morphologically modified epizoic earwigs based on molecular evidence. PLoS ONE 8 (6): e66900.
Kocot, Kevin M., Torsten H. Struck, Julia Merkel, Damien S. Waits, Christiane Todt, Pamela M. Brannock, David A. Weese, Johanna T. Cannon, Leonid L. Moroz, Bernhard Lieb, Kenneth M. Halanych. 2016. Phylogenomics of Lophotrochozoa with consideration of systematic error. Systematic Biology, p. syw079
Koepfli, Klaus-Peter, Kerry A Deere, Graham J Slater, Colleen Begg, Keith Begg, Lon Grassman, Mauro Lucherini, Geraldine Veron, Robert K Wayne. 2008. Multigene phylogeny of the Mustelidae: Resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biology 6 (1): 10.
Koepfli, Klaus-Peter, Matthew E. Gompper, Eduardo Eizirik, Cheuk-Chung Ho, Leif Linden, Jesus E. Maldonado, Robert K. Wayne. 2007. Phylogeny of the Procyonidae (Mammalia: Carnivora): Molecules, morphology and the Great American Interchange. Molecular Phylogenetics and Evolution 43 (3): 1076-1095.
Koepfli, Klaus-Peter, Susan M. Jenks, Eduardo Eizirik, Tannaz Zahirpour, Blaire Van Valkenburgh, Robert K. Wayne. 2006. Molecular systematics of the Hyaenidae: Relationships of a relictual lineage resolved by a molecular supermatrix. Molecular Phylogenetics and Evolution 38 (3): 603-620.
Korotkova, N., Borsch, T., Quandt, D., Taylor, N. P., Müller, K. F., & Barthlott, W. (2011). What does it take to resolve relationships and to identify species with molecular markers? An example from the epiphytic Rhipsalideae (Cactaceae). American Journal of Botany, 98(9), 1549-1572.
Krajewski, Carey, Justin T. Sipiorski, Frank E. Anderson. 2010. Complete mitochondrial genome sequences and the phylogeny of cranes (Gruiformes: Gruidae). The Auk 127 (2): 440-452.
Krause, Johannes, Tina Unger, Aline Noçon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H Dear, Adrian W Briggs, Sarah CE Bray, Stephen J O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Pääbo, Michael Hofreiter. 2008. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evolutionary Biology 8 (1): 220.
Kretzer A., Luoma D., Molina R., & Spatafora J. 2003. Taxonomy of the Rhizopogon vinicolor species complex based on analysis of ITS sequences and microsatellite loci. Mycologia, 95(3): 480-487.
Kristensen R., Torp M., Kosiak B., & Holst-jensen A. 2005. Phylogeny and toxigenic potential is correlated in Fusarium species as revealed by partial translation elongation factor 1 alpha gene sequences. Mycological Research, 109 (2): 173-186.
Ksepka D., Fordyce R., Ando Y., & Jones C.M. 2012. New fossil penguins (Aves, Sphenisciformes) from the Oligocene of New Zealand reveal the skeletal plan of stem penguins. Journal of Vertebrate Paleontology, 32(2): 235-254.
Ksepka, Daniel T., Matthew J. Phillips. 2015. Avian diversification patterns across the K-Pg boundary: influence of calibrations, datasets, and model misspecification. Annals of the Missouri Botanical Garden 100 (4): 300-328
Kurzweil H., Linder H., & Chesselet P. 1991. The phylogeny and evolution of the Pterygodium-Corycium complex (Coryciinae, Orchidaceae). Plant Systematics and Evolution, 175: 161-223
L. J. Iannone, D. Cabral, C. L. Schardl, M. S. Rossi, 2009, 'Phylogenetic divergence, morphological and physiological differences distinguish a new Neotyphodium endophyte species in the grass Bromus auleticus from South America', Mycologia, vol. 101, no. 3, pp. 340-351
Lahr, D.J.G., J. Grant, T. Nguyen, J.H. Lin, L.A. Katz. 2011. Comprehensive phylogenetic reconstruction of Amoebozoa based on concatenated analyses of SSU-rDNA and actin genes. PLoS ONE 6 (7): e22780.
Lambkin, C., Sinclair B., Pape T., Courtney G.W., Skevington J., Meier R., Yeates D., Blagoderov V., & Wiegmann B.M. 2013. The phylogenetic relationships among infraorders and superfamilies of Diptera based on morphological evidence. Systematic Entomology 38 (1): 164-179.
Lambkin, C.L., & Bartlett J.S. 2011. Bush Blitz aids description of three new species and a new genus of Australian beeflies (Diptera, Bombyliidae, Exoprosopini). ZooKeys 280 (150): 231-280.
Lang, Jenna Morgan, Aaron E. Darling, Jonathan A. Eisen. 2013. Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices. PLoS ONE 8 (4): e62510.
Larson P., & Daly M. 2015. Phylogenetic analysis reveals an evolutionary transition from internal to external brooding in Epiactis Verrill (Cnidaria: Anthozoa: Actiniaria) and rejects the validity of the genus Cnidopus Carlgren. Molecular Phylogenetics and Evolution, .
Lartillot, Nicolas, Frédéric Delsuc. 2012. Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model. Evolution 66 (6): 1773-1787.
Latha K., & Manimohan P. 2016. Five new species of Inocybe (Agaricales) from tropical India based on morphological and molecular data. Mycologia, 108(1): 110-122.
Laurin-Lemay, S., Brinkmann, H., & Philippe, H. (2012). Origin of land plants revisited in the light of sequence contamination and missing data. Current Biology, 22(15), R593-R594.
Lavin M., Wojciechowski M., Gasson P., Hughes C., & Wheeler E. 2003. Phylogeny of robinioid legumes (Fabaceae) revisited: Coursetia and Gliricidia recircumscribed, and a biogeographical appraisal of the Caribbean endemics. Systematic Botany, 28(2): 387-409.
Lechat C., Crous P., & Groenewald J. 2010. The enigma of Calonectria species occurring on leaves of Ilex aquifolium in Europe. IMA Fungus, 1(2): 101-108.
Lecroy, Mary, F. Keith Barker. 2006. New species of bush-warbler from Bougainville Island and a monophyletic origin for southwest Pacific Cettia. American Museum Novitates 3511: 1-20.[1:ANSOBF]2.0.CO;2
Lee S., Lee I., & Suh Y. 2005. Molecular evidence for recognizing Antithamnion sparsum (Ceramiales, Rhodophyta) at the species level. Phycologia, 44: 530-535.[530:MEFRAS]2.0.CO;2
Lee, J.Y., Joseph L., & Edwards S. 2011. A species tree for the Australo-Papuan fairy-wrens and allies (Aves: Maluridae). Systematic Biology 61 (2): 253-271.
Lehtonen S., Tuomisto H., Rouhan G., & Christenhusz M. 2013. Taxonomic Revision of the Fern Genus Osmolindsaea (Lindsaeaceae). Systematic Botany, 38(4): 887-900.
Leocadio Blanco-Bercial, Janet Bradford-Grieve, Ann Bucklin, 2011, 'Molecular phylogeny of the Calanoida (Crustacea: Copepoda)', Molecular Phylogenetics and Evolution, vol. 59, no. 1, pp. 103-113
Lerner, H., M. Klaver, D. Mindell. 2008. Molecular phylogenetics of the Buteonine birds of prey (Accipitridae). The Auk 125 (2): 304-315.
Lerner, Heather R.L., Matthias Meyer, Helen F. James, Michael Hofreiter, Robert C. Fleischer. 2011. Multilocus Resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers. Current Biology 21 (21): 1838-1844.
Les, D. H., Moody, M. L., & Jacobs, S. W. L. 2005. Phylogeny and systematics of Aponogeton (Aponogetonaceae): The Australian species. Syst. Bot. 30: 503-519.
Leslie, A. B., J. M. Beaulieu, H. S. Rai, P. R. Crane, M. J. Donoghue, S. Mathews. 2012. Hemisphere-scale differences in conifer evolutionary dynamics. Proceedings of the National Academy of Sciences. 109 (40): 16217-16221.
Letsch, H. and S. Simon. 2013. Insect phylogenomics: new insights on the relationships of lower neopteran orders (Polyneoptera). Systematic Entomology 38 (4): 783-793.
Levin, R. A., Myers, N. R., & Bohs, L. (2006). Phylogenetic relationships among the “spiny solanums”(Solanum subgenus Leptostemonum, Solanaceae). American Journal of Botany, 93(1), 157-169.
Lieckfeldt, Elke, Cornelia M. Kullnig, Christian P. Kubicek, Gary J. Samuels, and Thomas Börner. "< i> Trichoderma aureoviride:</i> phylogenetic position and characterization." Mycological Research 105, no. 3 (2001): 313-322.
Liede S., & Tuber A. 2000. Sarcostemma R. Br. (Apocynaceae - Asclepiadoideae) - a Controversial Generic Circumscription Reconsidered: Evidence from trnL-F Spacers. Plant Systematics and Evolution, 225: 133-140.
Lima C.S., Pfenning L.H., Costa S., Abreu L.M., & Leslie J. 2012. Fusarium tupiense sp. nov., a member of the Gibberella fujikuroi complex that causes mango malformation in Brazil. Mycologia , 104(6): 1408-1419.
Lindner D., & Banik M. 2008. Molecular phylogeny of Laetiporus and other brown-rot polypore genera in North America. Mycologia, 100(3): 417-430.
Ling Ming Tsang, Ka Hou Chu, Yair Achituv, Benny Kwok Kan Chan, 2015, 'Molecular phylogeny of the acorn barnacle family Tetraclitidae (Cirripedia: Balanomorpha: Tetraclitoidea): Validity of shell morphology and arthropodal characteristics in the systematics of Tetraclitid barnacles', Molecular Phylogenetics and Evolution, vol. 82, pp. 324-329
Ling Ming Tsang, Ka Hou Chu, Yoko Nozawa, Benny Kwok Kan Chan, 2014, 'Morphological and host specificity evolution in coral symbiont barnacles (Balanomorpha: Pyrgomatidae) inferred from a multi-locus phylogeny', Molecular Phylogenetics and Evolution, vol. 77, pp. 11-22
Linse, Katrin, Jennifer A. Jackson, Elaine Fitzcharles, Chester J. Sands, John S. Buckeridge. 2013. Phylogenetic position of Antarctic Scalpelliformes (Crustacea: Cirripedia: Thoracica). Deep Sea Research Part I: Oceanographic Research Papers 73:99-116.
Lohmann, L. G., Bell, C. D., Calió, M. F., & Winkworth, R. C. (2013). Pattern and timing of biogeographical history in the Neotropical tribe Bignonieae (Bignoniaceae). Botanical Journal of the Linnean Society, 171(1), 154-170.
Lombard L., Crous P., Wingfield B., & Wingfield M.J. 2010. Multigene phylogeny and mating tests reveal three cryptic species related to Calonectria pauciramosa. Studies in Mycology, 66: 15-30.
Lombard L., Rodas C., Crous P., Wingfield B., & Wingfield M.J. 2009. Calonectria (Cylindrocladium) species associated with dying Pinus cuttings. Persoonia, 23: 41-47.
Lombard L., Zhou X., Crous P., Wingfield B., & Wingfield M.J. 2010. Calonectria species associated with cutting rot of Eucalyptus. Persoonia, 24: 1-11.
Lopez-Osorio, Federico, Kurt M. Pickett, James M. Carpenter, Bryan A. Ballif, Ingi Agnarsson. 2014. Phylogenetic relationships of yellowjackets inferred from nine loci (Hymenoptera: Vespidae, Vespinae, Vespula and Dolichovespula). Molecular Phylogenetics and Evolution 73: 190-201.
Lorch J.M., Lindner D.L., Gargas A., Muller L.K., Minnis A.M., & Blehert D.S. 2012. A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of Geomyces destructans, the causal agent of bat white-nose syndrome. Mycologia, 105(2), 2013, pp. 237–252.
Lovette, Irby J., Brian S. Arbogast, Robert L. Curry, Robert M. Zink, Carlos A. Botero, John P. Sullivan, Amanda L. Talaba, Rebecca B. Harris, Dustin R. Rubenstein, Robert E. Ricklefs, Eldredge Bermingham. 2012. Phylogenetic relationships of the mockingbirds and thrashers (Aves: Mimidae). Molecular Phylogenetics and Evolution 63 (2): 219-229.
Lovette, Irby J., Dustin R. Rubenstein. 2007. A comprehensive molecular phylogeny of the starlings (Aves: Sturnidae) and mockingbirds (Aves: Mimidae): congruent mtDNA and nuclear trees for a cosmopolitan avian radiation. Molecular Phylogenetics and Evolution 44 (3): 1031-1056.
Lovette, Irby J., Jorge L. Pérez-Emán, John P. Sullivan, Richard C. Banks, Isabella Fiorentino, Sergio Córdoba-Córdoba, María Echeverry-Galvis, F. Keith Barker, Kevin J. Burns, John Klicka, Scott M. Lanyon, Eldredge Bermingham. 2010. A comprehensive multilocus phylogeny for the wood-warblers and a revised classification of the Parulidae (Aves). Molecular Phylogenetics and Evolution 57 (2): 753-770.
Lu B., Druzhinina I., Fallah P., Chaverri P., Gradinger C., Kubicek C., & Samuels G. 2003. Hypocrea/Trichoderma species with pachybasium-like conidiophores: teleomorphs for T. minutisporum and T. polysporum, and their newly discovered relatives. Mycologia, 96(2), 2004, pp. 310–342
No link provided! Try Google Scholar or
Lubbe, Carolien M., Sandra Denman, Paul F. Cannon, JZ Ewald Groenewald, Sandra C. Lamprecht, and Pedro W. Crous. "Characterization of Colletotrichum species associated with diseases of Proteaceae." Mycologia 96, no. 6 (2004): 1268-1279.
Lucas Leclere, Peter Schuchert, Corinne Cruaud , Arnaud Couloux, Michael Manuel, 2009. Molecular phylogenetics of Thecata (Hydrozoa, Cnidaria) reveals long-term maintenance of life history traits despite high frequency of recent character changes. Systematic Biology 58 (5): 509-526.
Lucas Leclère, Peter Schuchert, Michaël Manuel, 2007, 'Phylogeny of the Plumularioidea (Hydrozoa, Leptothecata): evolution of colonial organisation and life cycle', Zoologica Scripta, vol. 36, no. 4, pp. 371-394
Luebert, F., & Wen, J. (2008). Phylogenetic analysis and evolutionary diversification of Heliotropium sect. Cochranea (Heliotropiaceae) in the Atacama Desert. Systematic Botany, 33(2), 390-402.
Luisa F. Dueñas, Phil Alderslade, Juan A. Sánchez, 2014, 'Molecular systematics of the deep-sea bamboo corals (Octocorallia: Isididae: Keratoisidinae) from New Zealand with descriptions of two new species of Keratoisis', Molecular Phylogenetics and Evolution, vol. 74, pp. 15-28
Luque, Jordi, Soledad Martos, and Alan JL Phillips. "Botryosphaeria viticola sp. nov. on grapevines: a new species with a Dothiorella anamorph." Mycologia 97.5 (2005): 1111-1121.
Luque, Jordi, Soledad Martos, and Alan JL Phillips. "Botryosphaeria viticola sp. nov. on grapevines: a new species with a Dothiorella anamorph." Mycologia 97.5 (2005): 1111-1121.
Lutz M., Bauer R., Begerow D., & Oberwinkler F. 2004. Tuberculina-Thanatophytum/rhizoctonia crocorum-Helicobasidium: a unique mycoparasitic-phytoparasitic life strategy. Mycological Research, 108(3): 227-238.
Lutz, Holly L., Jason D. Weckstein, José S.L. Patané, John M. Bates, Alexandre Aleixo. 2013. Biogeography and spatio-temporal diversification of Selenidera and Andigena Toucans (Aves: Ramphastidae). Molecular Phylogenetics and Evolution 69 (3): 873-883.
Lydia L. Smith, Jennifer L. Fessler, Michael E. Alfaro, J. Todd Streelman, Mark W. Westneat, 2008, 'Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes', Molecular Phylogenetics and Evolution, vol. 49, no. 1, pp. 136-152
M. Gelardi, G. Simonini, E. Ercole, A. Vizzini, 2014, 'Alessioporus and Pulchroboletus (Boletaceae, Boletineae), two novel genera for Xerocomus ichnusanus and X. roseoalbidus from the European Mediterranean basin: molecular and morphological evidence', Mycologia, vol. 106, no. 6, pp. 1168-1187
M. Groussin, M. Gouy, 2011, 'Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea', Molecular Biology and Evolution, vol. 28, no. 9, pp. 2661-2674
M. J. Trappe, M. E. Smith, E. A. Hobbie, 2015, 'Exploring the phylogenetic affiliations and the trophic mode of Sedecula pulvinata (Sedeculaceae)', Mycologia, vol. 107, no. 4, pp. 688-696
M. Klautau, F. Azevedo, B. Condor-Lujan, H. T. Rapp, A. Collins, C. A. d. M. Russo, 2013, 'A Molecular Phylogeny for the Order Clathrinida Rekindles and Refines Haeckel's Taxonomic Proposal for Calcareous Sponges', Integrative and Comparative Biology, vol. 53, no. 3, pp. 447-461
M. N Dawson, A. S. Gupta, M. H. England, 2005, 'Coupled biophysical global ocean model and molecular genetic analyses identify multiple introductions of cryptogenic species', Proceedings of the National Academy of Sciences, vol. 102, no. 34, pp. 11968-11973
M. Taniguchi, 2004, 'Molecular phylogeny of Neocalanus copepods in the subarctic Pacific Ocean, with notes on non-geographical genetic variations for Neocalanus cristatus', Journal of Plankton Research, vol. 26, no. 10, pp. 1249-1255
MARTIM MELO, JÉRÔME FUCHS, 2008, 'Phylogenetic relationships of the Gulf of Guinea Alcedo kingfishers', Ibis, vol. 150, no. 3, pp. 633-639
Magallón, Susana, Sandra Gómez-Acevedo, Luna L. Sánchez-Reyes, Tania Hernández-Hernández. 2015. A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity. New Phytologist 207 (2): 437-453
Mahler, D. L., T. Ingram, L. J. Revell, J. B. Losos. 2013. Exceptional Convergence on the Macroevolutionary Landscape in Island Lizard Radiations. Science 341 (6143): 292-295.
Mann, Nigel I., F. Keith Barker, Jeff A. Graves, Kimberly A. Dingess-Mann, Peter J.B. Slater. 2006. Molecular data delineate four genera of “Thryothorus” wrens. Molecular Phylogenetics and Evolution 40 (3): 750-759
Manns U., & Anderberg A. 2005. Molecular phylogeny of Anagallis (Myrsinaceae) based on ITS, trnL-F and ndhF sequence data. International Journal of Plant Sciences, 166: 1019-1028.
Manzanilla V., & Bruneau A. 2012. Phylogeny reconstruction in the Caesalpinieae grade (Leguminosae) based on duplicated copies of the sucrose synthase gene and plastid markers. Molecular Phylogenetics and Evolution. 65: 149–162.
Marazzi B., & Sanderson M.J. 2010. Large-Scale Patterns of Diversification in the Widespread Legume Genus Senna and the Evolutionary Role of Extrafloral Nectaries. Evolution, 64(12): 3570-3592.
Marcelo R. Britto, 2003, 'Phylogeny of the subfamily Corydoradinae Hoedeman, 1952 (Siluriformes: Callichthyidae), with a definition of its genera', Proceedings of the Academy of Natural Sciences of Philadelphia, vol. 153, no. 1, pp. 119-154[0119:potsch];2
Marcos Pérez-Losada, Margaret Harp, Jens T. Høeg, Yair Achituv, Diana Jones, Hiromi Watanabe, Keith A. Crandall. 2008. The tempo and mode of barnacle evolution. Molecular Phylogenetics and Evolution 46(1):328-346.
Maria Celia Machel Defrance Malay, François Michonneau, 2014, 'Phylogenetics and morphological evolution of coral-dwelling barnacles (Balanomorpha: Pyrgomatidae)', Biological Journal of the Linnean Society, pp. n/a-n/a
Maria Eduarda Alves Santos, Marcelo Visentini Kitahara, Alberto Lindner, James Davis Reimer, 2015, 'Overview of the order Zoantharia (Cnidaria: Anthozoa) in Brazil', Marine Biodiversity, vol. 46, no. 3, pp. 547-559
Mariangeles Arce H., Roberto E. Reis, Anthony J. Geneva, Mark H. Sabaj Pérez, 2013, 'Molecular phylogeny of thorny catfishes (Siluriformes: Doradidae)', Molecular Phylogenetics and Evolution, vol. 67, no. 3, pp. 560-577
Mario Hoenemann, William F. Humphreys, Difei Li, Marco T. Neiber, Stefan Koenemann, Thomas M. Iliffe, Frederick R. Schram, 2013, 'Phylogenetic analysis and systematic revision of Remipedia (Nectiopoda) from Bayesian analysis of molecular data', Journal of Crustacean Biology, vol. 33, no. 5, pp. 603-619
Marisol Sánchez-García, Patrick Brandon Matheny, 2016, 'Is the switch to an ectomycorrhizal state an evolutionary key innovation in mushroom-forming fungi? A case study in the Tricholomatineae (Agaricales)', Evolution, vol. 71, no. 1, pp. 51-65
Mark W. Westneat, Michael E. Alfaro, 2005, 'Phylogenetic relationships and evolutionary history of the reef fish family Labridae', Molecular Phylogenetics and Evolution, vol. 36, no. 2, pp. 370-390
Marks, Ben D., Jason D. Weckstein, Robert G. Moyle. 2007. Molecular phylogenetics of the bee-eaters (Aves: Meropidae) based on nuclear and mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution 45 (1): 23-32.
Marlowe K., & Hufford L. 2006. Taxonomy and biogeography of Gaillardia (Asteraceae): a phylogenetic analysis. Systematic Botany, 32(1), 208-226.
Martin Dohrmann, Christopher Kelley, Michelle Kelly, Andrzej Pisera, John N. A. Hooper, Henry M. Reiswig, 2017, 'An integrative systematic framework helps to reconstruct skeletal evolution of glass sponges (Porifera, Hexactinellida)', Frontiers in Zoology, vol. 14, no. 1
Martin Irestedt, Jérôme Fuchs, Knud A. Jønsson, Jan I. Ohlson, Eric Pasquet, Per G.P. Ericson, 2008, 'The systematic affinity of the enigmatic Lamprolia victoriae (Aves: Passeriformes)—An example of avian dispersal between New Guinea and Fiji over Miocene intermittent land bridges?', Molecular Phylogenetics and Evolution, vol. 48, no. 3, pp. 1218-1222
Martin Malmstrøm, Michael Matschiner, Ole K Tørresen, Bastiaan Star, Lars G Snipen, Thomas F Hansen, Helle T Baalsrud, Alexander J Nederbragt, Reinhold Hanel, Walter Salzburger, Nils C Stenseth, Kjetill S Jakobsen, Sissel Jentoft, 2016, 'Evolution of the immune system influences speciation rates in teleost fishes', Nature Genetics
Martin Schwentner, Thomas C.G. Bosch, 2015, 'Revisiting the age, evolutionary history and species level diversity of the genus Hydra (Cnidaria: Hydrozoa)', Molecular Phylogenetics and Evolution, vol. 91, pp. 41-55
Matte-Tailliez, Oriane, Céline Brochier, Patrick Forterre and Hervé Philippe. 2002. Archaeal phylogeny based on ribosomal proteins. Molecular Biology and Evolution 19 (5): 631-639.
Maximiliano M. Maronna, Thaís P. Miranda, Álvaro L. Peña Cantero, Marcos S. Barbeitos, Antonio C. Marques, 2016, 'Towards a phylogenetic classification of Leptothecata (Cnidaria, Hydrozoa)', Scientific Reports, vol. 6, p. 18075