Bibliographic references for the synthetic tree

The following studies (listed alphabetically by first author) have contributed to the current synthetic tree.

A. Delgado-Salinas, M. Thulin, R. Pasquet, N. Weeden, M. Lavin. 2011. Vigna (Leguminosae) sensu lato: The names and identities of the American segregate genera. American Journal of Botany 98(10):1694-1715.
Agnarsson, I., Zambrana-torrelio C.M., Flores saldaña N.P., & May-collado L.M. 2011. A time-calibrated species-level phylogeny of bats (Chiroptera, Mammalia). PLoS Currents: Tree of Life, Version 44.
Agorreta, Ainhoa, Diego San Mauro, Ulrich Schliewen, James L. Van Tassell, Marcelo Kovačić, Rafael Zardoya, Lukas Rüber. 2013. Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution 69 (3): 619-633.
Ahyong, S., Lai J., Sharkey D., Colgan D., & Ng P. 2007. Phylogenetics of the brachyuran crabs (Crustacea: Decapoda): the status of Podotremata based on small subunit nuclear ribosomal RNA. Molecular Phylogenetics and Evolution 45 (2): 576-586.
Ainscough, B. J., Breinholt, J. W., Robison, H. W., & Crandall, K. A. (2013). Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae). Zoologica Scripta.
Allen G., Soltis D., & Soltis P. 2003. Phylogeny and biogeography of Erythronium (Liliaceae) inferred from chloroplast matK and nuclear rDNA ITS sequences. Systematic Botany, 28(3): 512-523.
Alström, Per, Keith N. Barnes, Urban Olsson, F. Keith Barker, Paulette Bloomer, Aleem Ahmed Khan, Masood Ahmed Qureshi, Alban Guillaumet, Pierre-André Crochet, Peter G. Ryan. 2013. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular Phylogenetics and Evolution 69 (3): 1043-1056.
Anker, A., & Baeza J. 2012. Molecular and morphological phylogeny of hooded shrimps, genera Betaeus and Betaeopsis (Decapoda, Alpheidae): testing the Center of Origin biogeographic model and evolution of life history traits. Molecular Phylogenetics and Evolution 64 (3): 401-415.
Aoki T., & O'donnell K. 1999. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the group 1 population of F. graminearum. Mycologia, 1999(4): 597-609.
Aoki T., O'donnell K., Homma Y., & Lattanzi A. 2003. Sudden death syndrome of soybean is caused by two morphologically and phylogenetically distinct species within the Fusarium solani species complex, F. virguliforme in North America and F. tucumaniae in South America. Mycologia, 95(4): 660-684.
Aoki T., Scandiani M.M., & O'donnell K. 2011. Phenotypic, molecular phylogenetic and pathogenetic characterization of Fusarium crassistipitatum sp. nov., a novel soybean sudden death syndrome pathogen from Argentina and Brazil. Mycoscience, 53(3), 167-186
Aoki T., Suga H., Hyakumachi M., Scandiani M.M., & O'donnell K. 2012. Fusarium azukicola sp. nov., a novel exotic azuki bean root-rot pathogen in Hokkaido, Japan. Mycologia, 104(5): 1068-1084.
Armbruster J.W. 2004. Phylogenetic relationships of the suckermouth armoured catfishes (Loricariidae) with emphasis on the Hypostominae and the Ancistrinae. Zoological Journal of the Linnean Society, 141(1): 1-80.
Arshad, Muhammad, Javier Gonzalez, Abdel Aziz El-Sayed, Tim Osborne, Michael Wink. 2009. Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers. Journal of Ornithology 150 (2): 419-430.
Baeza, J. 2013. Baeza, J.A. 2013. Multi-locus molecular phylogeny of broken-back shrimps (genus Lysmata and allies): a test of the 'Tomlinson-Ghiselin' hypothesis explaining the evolution of simultaneous hermaphroditism. Molecular Evolution and Phylogenetics 69 (1): 46-62.
Baldwin B.G., Kalisz S., & Armbruster W.S. 2011. Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae). American Journal of Botany, 98(4): 731-753.
Ban S., Sakane T., Toyama K., & Nakagiri A. 2009. Teleomorph-anamorph relationships and reclassification of Cordyceps cuboidea and its allied species. Mycoscience, 50: 261-272.
Banks, J., & Paterson A. 2004. A penguin-chewing louse (Insecta: Phthiraptera) phylogeny derived from morphology. Invertebrate Systematics 18 (1): 89-100.
Barker F., Cibois A., Schikler P., Feinstein J., and Cracraft J. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America 101 (30): 11040-11045.
Barker, F. K., K. J. Burns, J. Klicka, S. M. Lanyon, I. J. Lovette. 2013. Going to extremes: contrasting rates of diversification in a recent radiation of New World passerine birds. Systematic Biology 62 (2): 298-320.
Barnes I., Roux J., Wingfield B., Dudzinski M., Old K., & Wingfield M.J. 2003. Ceratocystis pirilliformis, a new species from Eucalyptus nitens in Australia. Mycologia 95, no. 5 (2003): 865-871.
Barns S., Delwiche C., Palmer J., & Pace N. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences of the United States of America, 93: 9188-9193.
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Bartosova P., Fiala I., & Hypsa V. 2009. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Molecular Phylogenetics and Evolution, 53(1): 81-93.
Bayha K.M., & Dawson M.N. 2010. A new family of allomorphic jellyfishes, Drymonematidae (Scyphozoa, Discomedusae), emphasizes evolution in the functional morphology and trophic ecology of gelatinous zooplankton. Biological Bulletin, 219(3).
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Bell, C. D. (2007). Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA. Molecular phylogenetics and evolution, 44(3), 929-941.
Bendiksby, M., Thorbek, L., Scheen, A. C., Lindqvist, C., & Ryding, O. (2011). An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon, 60(2), 471-484.
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Benjamin Ollomo, Patrick Durand, Franck Prugnolle, Emmanuel Douzery, Céline Arnathau, Dieudonné Nkoghe, Eric Leroy, François Renaud. 2009. A New Malaria Agent in African Hominids. PLoS Pathogens 5(5):e1000446.
Bentlage B. 2010. Evolution of box jellyfish (Cnidaria: Cubozoa), a group of highly toxic invertebrates. Proceedings of the Royal Society B: Biological Sciences, 277(1680): 493-501.
Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299
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Bills G., Polishook J., Goetz M., Sullivan R., & White J. 2002. Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels. Mycological Progress, 1(1): 3-17.
Bischoff J., Humber R., & Rehner S. 2008. A multilocus phylogeny of the Metarhizium anisopliae lineage. Mycologia, 101(4): 512-530.
Bischoff J., Sullivan R., Kjer K., & Jr J. 2004. Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota). Mycologia, 96: 1088-1094.
Bischoff, Joseph F., Priscila Chaverri, and James F. White. "Clarification of the host substrate of Ascopolyporus and description of Ascopolyporus philodendrus sp. nov." Mycologia 97.3 (2005): 710-717.
Blanco, Oscar, Ana Crespo, Pradeep K. Divakar, John A. Elix, and H. Thorsten Lumbsch. "Molecular phylogeny of parmotremoid lichens (Ascomycota, Parmeliaceae)." Mycologia 97, no. 1 (2005): 150-159.
Boatwright J., Roux M., Wink M., Morozova T., & Wyk B. 2008. Phylogenetic Relationships of the Tribe Crotalarieae (Fabaceae) Inferred from DNA Sequences and Morphology. Systematic botany, 33(4), 752-761.
Boatwright J., Savolainen V., Wyk B., Schutte-vlok A., Forest F., & Bank M. 2007. Systematic position of the anomolous genus Cadia and the phylogeny of the tribe Podalyrieae (Fabaceae). Systematic Botany, 33(1), 133-147.
Bock, C., Luo, W., Kusber, W. H., Hegewald, E., Pažoutová, M., & Krienitz, L. (2013). Classification of Crucigenoid Algae: Phylogenetic Position of the Reinstated Genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta) 1. Journal of Phycology. 49:329–339
Bracken, H. D., De Grave, S., Toon, A., Felder, D. L., & Crandall, K. A. 2010. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). Zoologica Scripta 39 (2): 198-212.
Bracken-Grissom, Heather D., Maren E. Cannon, Patricia Cabezas, Rodney M. Feldmann, Carrie E. Schweitzer, Shane T. Ahyong, Darryl L. Felder, Rafael Lemaitre, and Keith A. Crandall. 2013. A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda). BMC Evolutionary Biology 13 (1): 128.
Bracken-Grissom, Heather D., Shane T. Ahyong, Richard D. Wilkinson, Rodney M. Feldmann, Carrie E. Schweitzer, Jesse W. Breinholt, Matthew Bendall, Ferran Palero, Tin-Yam Chan, Darryl L. Felder, Rafael Robles, Ka-Hou Chu, Ling-Ming Tsang, Dohyup Kim, Joel W. Martin, and Keith A. Crandall. 2014. The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology: syu008v1-syu008.
Bracken‐Grissom, H. D., Felder, D. L., Vollmer, N. L., Martin, J. W., & Crandall, K. A. (2012). Phylogenetics links monster larva to deep‐sea shrimp. Ecology and Evolution 2 (10): 2367-2373.
Brad R Ruhfel, Matthew A Gitzendanner, Pamela S Soltis, Douglas E Soltis, J Burleigh. 2014. From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol 14(1):23.
Brady, S., Schultz T., Fisher B., & Ward P. 2006. Evaluating alternative hypotheses for the early evolution and diversification of ants. Proceedings of the National Academy of Sciences of the United States of America, 103 (48): 18172-18177.
Breinholt, JW, Porter ML, Crandall KA (2012) Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae). PLoS ONE 7 (9): e46105
Bremer, B., & Eriksson, O. 2009. Time tree of Rubiaceae: Phylogeny and dating the family, subfamilies and tribes. Internat. J. Plant Sci. 170: 766-793.
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Brent D. Mishler, Nunzio Knerr, Carlos E. González-Orozco, Andrew H. Thornhill, Shawn W. Laffan, Joseph T. Miller, 2014, 'Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia', Nature Communications, vol. 5
Brumfield, R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61 (2): 346-367.
Burlakoti R.R., Neate S.M., Adhikari T., Gyawali S., Salas B., Steffenson B.J., & Schwarz P.B. 2011. Trichothecene Profiling and Population Genetic Analysis of Gibberella zeae from Barley in North Dakota and Minnesota. Phytopathology, 101(6): 687-695.
Burlakoti, R. R., S. Ali, G. A. Secor, S. M. Neate, M. P. McMullen, and T. B. Adhikari. "Genetic relationships among populations of Gibberella zeae from barley, wheat, potato, and sugar beet in the Upper Midwest of the United States." Phytopathology 98, no. 9 (2008): 969-976.
Burns, J. H., Faden, R. B., & Steppan, S. J. 2011. Phylogenetic studies in the Commelinaceae subfamily Commelinoideae inferred from nuclear ribosomal and chloroplast DNA sequences. Syst. Bot. 36: 268-276.
Burns, Kevin J., Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution 75: 41-77.
Bärmann, E.V., Rössner G.E., & Wörheide G. 2013. A revised phylogeny of Antilopini (Bovidae, Artiodactyla) using combined mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 67 (2): 484-493.
Cabezas, P., Sanmartin I., Paulay G., Macpherson E., & Machordom A. 2011. Deep under the sea: unraveling the evolutionary history of the deep-sea squat lobster Paramunida (Decapoda, Munididae). Evolution 66 (6): 1878-1896.
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Cabrera L., Salazar G., Chase M., Mayo S., Bogner J., & Davila P. 2008. Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and non-coding plastid DNA. American Journal of Botany, 95: 1153-1165.
Callejas R., Davidson C., Jaramillo M., Smith J., Stevens A., & Tepe E. 2008. A phylogeny of the tropical genus Piper using ITS and the chloroplast intron psbJ-petA. Systematic Botany, 33(4), 647-660.
Camara M., Palm M., Van berkum P., & O'neill N. 2002. Molecular phylogeny of Leptosphaeria and Phaeosphaeria. Mycologia, 94(4): 630-640.
Cardillo, Marcel, Olaf R. P. Bininda-Emonds, Elizabeth Boakes, Andy Purvis. 2004. A species-level phylogenetic supertree of marsupials. Journal of Zoology 264 (1): 11-31.
Cardoso D.B., Cavalcante de lima H., Sch?tz rodrigues R., Queiroz L.P., Pennington R., & Lavin M. 2012. The Bowdichia clade of Genistoid legumes: phylogenetic analysis of combined molecular (ITS, matK and trnL intron) and morphological data and a recircumscription of Diplotropis. Taxon, 61(5): 1074?1087.
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Cardoso D.B., Queiroz L.P., Cavalcante de lima H., Suganuma E., Van den berg C., & Lavin M. 2013. A molecular phylogeny of the Vataireoid legumes underscores floral evolvability that is general to many early-branching papilionoid lineages. American Journal of Botany, 100(2): 403-421.
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Cardoso D.B., Queiroz L.P., Pennington R., Cavalcante de lima H., Fonty E., Wojciechowski M., & Lavin M. 2012. Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early-branching lineages. American Journal of Botany, 99(12): 1991-2013.
Cariaga, K. A., Pruski, J. F., Oviedo, R., Anderberg, A. A., Lewis, C. E., & Francisco-Ortega, J. (2008). Phylogeny and systematic position of Feddea (Asteraceae: Feddeeae): a taxonomically enigmatic and critically endangered genus endemic to Cuba. Systematic Botany, 33(1), 193-202.
Carlos Montero-Castro, J., Delgado-Salinas, A., De Luna, E., & Eguiarte, L. E. (2006). Phylogenetic Analysisof Cestrum Section Habrothamnus (Solanaceae) Based on Plastid and Nuclear DNA Sequences. Systematic botany, 31(4), 843-850.
Cartwright, P., Evans N., Dunn C., Marques A., Miglietta M., & Collins A. 2008. Phylogenetics of Hydroidolina (Cnidaria, Hydrozoa). Journal of the Marine Biological Association of the United Kingdom 88 (8): 1663-1672.
Chakrabarty, Prosanta, Matthew P. Davis, W. Leo Smith, Zachary H. Baldwin, John S. Sparks. 2011. Is sexual selection driving diversification of the bioluminescent ponyfishes (Teleostei: Leiognathidae)? Molecular Ecology 20 (13): 2818-2834.
Chandra A., & Huff D. 2007. Salmacisia, a new genus of Tilletiales: reclassification of Tilletia buchloëana causing induced hermaphroditism in buffalograss. Mycologia, 100(1): 81-93.
Charlton N., Craven K., Afkhami M., Hall B., Swoboda G., Ghimire S.R., & Young C. 2012. Genetic diversity in epichloid endophytes of Bromus laevipes provides evidence for independent hybridization events. Molecular Ecology, .
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Charlton, Nikki D., Kelly D. Craven, Shipra Mittal, Andrew A. Hopkins, and Carolyn A. Young. "Epichloë canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis)." Mycologia 104, no. 5 (2012): 1187-1199.
Chaverri P., Gazis R., & Samuels G.J. 2011. Trichoderma amazonicum, a new endophytic species on Hevea brasiliensis and H. guianensis from the Amazon basin. Mycologia103 (1): 139-151 .
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Chaverri, Priscila, Gary J. Samuels, and Kathie T. Hodge. "The genus Podocrella and its nematode-killing anamorph Harposporium." Mycologia 97.2 (2005): 433-443.
Chaverri, Priscila, Joseph F. Bischoff, Harry C. Evans, and Kathie T. Hodge. "Regiocrella, a new entomopathogenic genus with a pycnidial anamorph and its phylogenetic placement in the Clavicipitaceae." Mycologia 97, no. 6 (2005): 1225-1237.
Chen, Wei-Jen, Sébastien Lavoué, and Richard L. Mayden. 2013. Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution 67 (8): 2218–2239.
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Chesser, R. Terry, Carol K. L. Yeung, Cheng-Te Yao, Xiu-Hua Tian, Shou-Hsien Li. 2010. Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA. Zootaxa 2603: 53-60.
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Cho, S., Zwick A., Regier J., Mitter C., Cummings M.P., Yao J., Du Z., Zhao H., Kawahara A.Y., Weller S.J., Davis D.R., Baixeras J., Brown J.W., & Parr C. 2011. Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?. Systematic Biology 60 (6): 782-796.
Christin, P.-A., Sage, T. L., Edwards, E. J., gburn, R. M., Khoshravesh, R., & Sage, R. F. 2011. Complex evolutionary transitions and the significance of c(3)-c(4) intermediate forms of photosynthesis in Molluginaceae. Evolution 65: 643-660.
Chung, K. S., Hipp, A. L., & Roalson, E. H. (2012). Chromosome number evolves independently of genome size in a clade with nonlocalized centromeres (Carex: Cyperaceae). Evolution, 66(9), 2708-2722.
Cibois, Alice, Jean-Claude Thibault, Céline Bonillo, Christopher E. Filardi, Dick Watling, Eric Pasquet. 2014. Phylogeny and biogeography of the fruit doves (Aves: Columbidae). Molecular Phylogenetics and Evolution 70: 442-453.
Clark J., Wagner W., & Roalson E. 2009. Patterns of diversification and ancestral range reconstruction in the Southeast Asian-Pacific angiosperm lineage Cyrtandra (Gesneriaceae). Molecular Phylogenetics and Evolution, 53(3): 982-994.
Clarkson, J. J., Knapp, S., Garcia, V. F., Olmstead, R. G., Leitch, A. R., & Chase, M. W. (2004). Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. Molecular phylogenetics and evolution, 33(1), 75-90.
Clement W., & Donoghue M. 2011. Dissolution of Viburnum section Megalotinus (Adoxaceae) of Southeast Asia and its implications for morphological evolution and biogeography. International Journal of Plant Sciences, 172(4): 559-573.
Coetzee M., Wingfield B., Bloomer P., Ridley G., & Wingfield M.J. 2003. Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia. Mycologia, 95(2): 285-293.
Colangelo, P., A.A. Bannikova, B. Kryštufek, V.S. Lebedev, F. Annesi, E. Capanna, A. Loy. 2010. Molecular systematics and evolutionary biogeography of the genus Talpa (Soricomorpha: Talpidae). Molecular Phylogenetics and Evolution 55 (2): 372-380.
Collado, Javier, Gonzalo Platas, Gerald F. Bills, Ángela Basilio, Francisca Vicente, J. Rubén Tormo, Pilar Hernández, M. Teresa Díez, and Fernando Peláez. "Studies on Morinia: Recognition of Morinia longiappendiculata sp. nov. as a new endophytic fungus, and a new circumscription of Morinia pestalozzioides." Mycologia 98, no. 4 (2006): 616-627.
Collevatti, R., Colli G., Giugliano L., Werneck F., & Werneck F. 2008. Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology 18 (2): 262-278.
Corl A., and Ellegren H. 2013. Sampling strategies for species trees: the effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution 67 (2): 358-366.
Costea M., Garcia I., Docksteder K., & Stefanovic S. 2013. More problems despite bigger flowers: systematics of Cuscuta tinctoria clade (subgenus Grammica, Convolvulaceae) with description of six new species. Systematic Botany.
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Couch B., & Kohn L. 2002. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia, 94(4): 683-693.
Coughenour J., Simmons M., Lombardi J., & Cappa J. 2010. Phylogeny of Celastraceae subfamily Salacioideae and tribe Lophopetaleae Inferred from Morphological Characters and Nuclear and Plastid Genes. Systematic Botany, 35(2): 358-367
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Cox, Cymon J., Bernard Goffinet, Norman J. Wickett, Sandra B. Boles, and A. Jonathan Shaw. 2010. Moss diversity: a molecular phylogenetic analysis of genera. Phytotaxa 9: 175-195.
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Crawford, N. G., B. C. Faircloth, J. E. McCormack, R. T. Brumfield, K. Winker, T. C. Glenn. 2012. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biology Letters 8 (5): 783-786.
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Crous P., Groenewald J., & Hill C. 2002. Cylindrocladium pseudonaviculatum sp. nov. from New Zealand, and new Cylindrocladium records from Vietnam. Sydowia, 54: 23-33.
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Cusimano N., Bogner J., Mayo S., Wong S.Y., Hesse M., Hetterscheid W., Keating R.C., & French J. 2011. Relationships within the Araceae: comparison of morphological patterns with molecular phylogenies. American Journal of Botany, 98(4), 654-668.
Dadheech P., Ballot A., Casper P., Kotut K., Novelo E., Lemma B., Pr?schold T., & Krienitz L. 2010. Phylogenetic relationship and divergence among planktonic strains of Arthrospira (Oscillatoriales, Cyanobacteria) of African, Asian and American origin deduced by 16S?23S ITS and phycocyanin operon sequences. Phycologia, 49(4): 361-372.
Dai, Yu-Cheng, Zheng Wang, Manfred Binder, and David S. Hibbett. "Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes." Mycologia 98, no. 4 (2006): 584-592.
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Davis, C. C., & Anderson, W. R. (2010). A complete generic phylogeny of Malpighiaceae inferred from nucleotide sequence data and morphology. American journal of botany, 97(12), 2031-2048.
Delgado-Salinas, A., Bibler, R., & Lavin, M. (2006). Phylogeny of the genus Phaseolus (Leguminosae): a recent diversification in an ancient landscape. Systematic Botany, 31(4), 779-791.
Delsuc, F., Tsagkogeorga G., Lartillot N., & Philippe H. 2008. Additional molecular support for the new chordate phylogeny. Genesis, 46: 592-604.
Delsuc, Frédéric, Mariella Superina, Marie-Ka Tilak, Emmanuel J.P. Douzery, Alexandre Hassanin. 2012. Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos. Molecular Phylogenetics and Evolution 62 (2): 673-680.
Dentinger B., & Mclaughlin D. 2006. Reconstructing the Clavariaceae using nuclear large subunit rDNA sequences and a new genus segregated from Clavaria. Mycologia, 98(5): 746-762.
Derryberry, E.P., Claramunt S., Derryberry G.E., Chesser R.T., Cracraft J., Aleixo A., Perez-eman J., Remsen J., and Brumfield R. 2011. Lineage diversification and morphological evolution in a large-scale continental radiation: the Neotropical ovenbirds and woodcreepers (Aves: Furnariidae). Evolution 65 (10): 2973-2986.
Devos, N., Barker, N. P., Nordenstam, B., & Mucina, L. (2010). A multi-locus phylogeny of Euryops (Asteraceae, Senecioneae) augments support for the" Cape to Cairo" hypothesis of floral migrations in Africa. Taxon, 59(1), 57-67.
Devos, N., Raspé, O., Oh, S. H., Tyteca, D., & Jacquemart, A. L. (2006). The evolution of Dactylorhiza (Orchidaceae) allotetraploid complex: insights from nrDNA sequences and cpDNA PCR-RFLP data. Molecular Phylogenetics and Evolution, 38(3) 767–778.
Dohrmann, M., Goecke C., Reed J., & Janussen D. 2012. Integrative taxonomy justifies a new genus, Nodastrella gen. nov., for North Atlantic "Rossella" species (Porifera: Hexactinellida: Rossellidae). Zootaxa 3383: 1-13.
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Dohrmann, M., Janussen D., Reitner J., Collins A., & Woerheide G. 2008. Phylogeny and evolution of glass sponges (Porifera, Hexactinellida). Systematic Biology 57 (3): 388-405.
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