DEVELOPMENT

Bibliographic references for the synthetic tree

The following studies (listed alphabetically by first author) have contributed to the current synthetic tree.

A. Delgado-Salinas, M. Thulin, R. Pasquet, N. Weeden, M. Lavin. 2011. Vigna (Leguminosae) sensu lato: The names and identities of the American segregate genera. American Journal of Botany 98(10):1694-1715. https://doi.org/10.3732/ajb.1100069
Agnarsson, I., Zambrana-torrelio C.M., Flores saldaña N.P., & May-collado L.M. 2011. A time-calibrated species-level phylogeny of bats (Chiroptera, Mammalia). PLoS Currents: Tree of Life, Version 44. https://doi.org/10.1371/currents.RRN1212
Agorreta, Ainhoa, Diego San Mauro, Ulrich Schliewen, James L. Van Tassell, Marcelo Kovačić, Rafael Zardoya, Lukas Rüber. 2013. Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution 69 (3): 619-633. https://doi.org/10.1016/j.ympev.2013.07.017
Ahyong, S., Lai J., Sharkey D., Colgan D., & Ng P. 2007. Phylogenetics of the brachyuran crabs (Crustacea: Decapoda): the status of Podotremata based on small subunit nuclear ribosomal RNA. Molecular Phylogenetics and Evolution 45 (2): 576-586. https://doi.org/10.1016/j.ympev.2007.03.022
Ainscough, B. J., Breinholt, J. W., Robison, H. W., & Crandall, K. A. (2013). Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae). Zoologica Scripta. https://doi.org/10.1111/zsc.12006
Allen G., Soltis D., & Soltis P. 2003. Phylogeny and biogeography of Erythronium (Liliaceae) inferred from chloroplast matK and nuclear rDNA ITS sequences. Systematic Botany, 28(3): 512-523. https://doi.org/10.1043/02-18.1
Alström, Per, Keith N. Barnes, Urban Olsson, F. Keith Barker, Paulette Bloomer, Aleem Ahmed Khan, Masood Ahmed Qureshi, Alban Guillaumet, Pierre-André Crochet, Peter G. Ryan. 2013. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular Phylogenetics and Evolution 69 (3): 1043-1056. https://doi.org/10.1016/j.ympev.2013.06.005
Anker, A., & Baeza J. 2012. Molecular and morphological phylogeny of hooded shrimps, genera Betaeus and Betaeopsis (Decapoda, Alpheidae): testing the Center of Origin biogeographic model and evolution of life history traits. Molecular Phylogenetics and Evolution 64 (3): 401-415. https://doi.org/10.1016/j.ympev.2012.04.015
Aoki T., & O'donnell K. 1999. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the group 1 population of F. graminearum. Mycologia, 1999(4): 597-609. https://doi.org/10.2307/3761245
Aoki T., O'donnell K., Homma Y., & Lattanzi A. 2003. Sudden death syndrome of soybean is caused by two morphologically and phylogenetically distinct species within the Fusarium solani species complex, F. virguliforme in North America and F. tucumaniae in South America. Mycologia, 95(4): 660-684. https://doi.org/10.2307/3761942
Aoki T., Scandiani M.M., & O'donnell K. 2011. Phenotypic, molecular phylogenetic and pathogenetic characterization of Fusarium crassistipitatum sp. nov., a novel soybean sudden death syndrome pathogen from Argentina and Brazil. Mycoscience, 53(3), 167-186 https://doi.org/10.1007/s10267-011-0150-3
Aoki T., Suga H., Hyakumachi M., Scandiani M.M., & O'donnell K. 2012. Fusarium azukicola sp. nov., a novel exotic azuki bean root-rot pathogen in Hokkaido, Japan. Mycologia, 104(5): 1068-1084. https://doi.org/10.3852/11-303
Armbruster J.W. 2004. Phylogenetic relationships of the suckermouth armoured catfishes (Loricariidae) with emphasis on the Hypostominae and the Ancistrinae. Zoological Journal of the Linnean Society, 141(1): 1-80. https://doi.org/10.1111/j.1096-3642.2004.00109.x
Arshad, Muhammad, Javier Gonzalez, Abdel Aziz El-Sayed, Tim Osborne, Michael Wink. 2009. Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers. Journal of Ornithology 150 (2): 419-430. https://doi.org/10.1007/s10336-008-0359-x
Baeza, J. 2013. Baeza, J.A. 2013. Multi-locus molecular phylogeny of broken-back shrimps (genus Lysmata and allies): a test of the 'Tomlinson-Ghiselin' hypothesis explaining the evolution of simultaneous hermaphroditism. Molecular Evolution and Phylogenetics 69 (1): 46-62. https://doi.org/10.1016/j.ympev.2013.05.013
Baldwin B.G., Kalisz S., & Armbruster W.S. 2011. Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae). American Journal of Botany, 98(4): 731-753. https://doi.org/10.3732/ajb.1000346
Ban S., Sakane T., Toyama K., & Nakagiri A. 2009. Teleomorph-anamorph relationships and reclassification of Cordyceps cuboidea and its allied species. Mycoscience, 50: 261-272. https://doi.org/10.1007/s10267-008-0480-y
Banks, J., & Paterson A. 2004. A penguin-chewing louse (Insecta: Phthiraptera) phylogeny derived from morphology. Invertebrate Systematics 18 (1): 89-100. https://doi.org/10.1071/IS03022
Barker F., Cibois A., Schikler P., Feinstein J., and Cracraft J. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America 101 (30): 11040-11045. https://doi.org/10.1073/pnas.0401892101
Barker, F. K., K. J. Burns, J. Klicka, S. M. Lanyon, I. J. Lovette. 2013. Going to extremes: contrasting rates of diversification in a recent radiation of New World passerine birds. Systematic Biology 62 (2): 298-320. https://doi.org/10.1093/sysbio/sys094
Barnes I., Roux J., Wingfield B., Dudzinski M., Old K., & Wingfield M.J. 2003. Ceratocystis pirilliformis, a new species from Eucalyptus nitens in Australia. Mycologia 95, no. 5 (2003): 865-871. https://doi.org/10.2307/3762015
Barns S., Delwiche C., Palmer J., & Pace N. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences of the United States of America, 93: 9188-9193.
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Bartosova P., Fiala I., & Hypsa V. 2009. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Molecular Phylogenetics and Evolution, 53(1): 81-93. https://doi.org/10.1016/j.ympev.2009.05.018
Bayha K.M., & Dawson M.N. 2010. A new family of allomorphic jellyfishes, Drymonematidae (Scyphozoa, Discomedusae), emphasizes evolution in the functional morphology and trophic ecology of gelatinous zooplankton. Biological Bulletin, 219(3).
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Bell, C. D. (2007). Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA. Molecular phylogenetics and evolution, 44(3), 929-941. https://doi.org/10.1016/j.ympev.2007.03.013
Bendiksby, M., Thorbek, L., Scheen, A. C., Lindqvist, C., & Ryding, O. (2011). An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon, 60(2), 471-484.
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Benjamin Ollomo, Patrick Durand, Franck Prugnolle, Emmanuel Douzery, Céline Arnathau, Dieudonné Nkoghe, Eric Leroy, François Renaud. 2009. A New Malaria Agent in African Hominids. PLoS Pathogens 5(5):e1000446. https://doi.org/10.1371/journal.ppat.1000446
Bentlage B. 2010. Evolution of box jellyfish (Cnidaria: Cubozoa), a group of highly toxic invertebrates. Proceedings of the Royal Society B: Biological Sciences, 277(1680): 493-501. https://doi.org/10.1098/rspb.2009.1707
Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299
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Bills G., Polishook J., Goetz M., Sullivan R., & White J. 2002. Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels. Mycological Progress, 1(1): 3-17. https://doi.org/10.1007/s11557-006-0001-3
Bischoff J., Humber R., & Rehner S. 2008. A multilocus phylogeny of the Metarhizium anisopliae lineage. Mycologia, 101(4): 512-530. https://doi.org/10.3852/07-202
Bischoff J., Sullivan R., Kjer K., & Jr J. 2004. Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota). Mycologia, 96: 1088-1094. https://doi.org/10.2307/3762091
Bischoff, Joseph F., Priscila Chaverri, and James F. White. "Clarification of the host substrate of Ascopolyporus and description of Ascopolyporus philodendrus sp. nov." Mycologia 97.3 (2005): 710-717. https://doi.org/10.3852/mycologia.97.3.710
Blanco, Oscar, Ana Crespo, Pradeep K. Divakar, John A. Elix, and H. Thorsten Lumbsch. "Molecular phylogeny of parmotremoid lichens (Ascomycota, Parmeliaceae)." Mycologia 97, no. 1 (2005): 150-159. https://doi.org/10.3852/mycologia.97.1.150
Boatwright J., Roux M., Wink M., Morozova T., & Wyk B. 2008. Phylogenetic Relationships of the Tribe Crotalarieae (Fabaceae) Inferred from DNA Sequences and Morphology. Systematic botany, 33(4), 752-761. https://doi.org/10.1600/036364408786500271
Boatwright J., Savolainen V., Wyk B., Schutte-vlok A., Forest F., & Bank M. 2007. Systematic position of the anomolous genus Cadia and the phylogeny of the tribe Podalyrieae (Fabaceae). Systematic Botany, 33(1), 133-147. https://doi.org/10.1600/036364408783887500
Bock, C., Luo, W., Kusber, W. H., Hegewald, E., Pažoutová, M., & Krienitz, L. (2013). Classification of Crucigenoid Algae: Phylogenetic Position of the Reinstated Genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta) 1. Journal of Phycology. 49:329–339 https://doi.org/10.1111/jpy.12039
Bracken, H. D., De Grave, S., Toon, A., Felder, D. L., & Crandall, K. A. 2010. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). Zoologica Scripta 39 (2): 198-212. https://doi.org/10.1111/j.1463-6409.2009.00410.x
Bracken-Grissom, Heather D., Maren E. Cannon, Patricia Cabezas, Rodney M. Feldmann, Carrie E. Schweitzer, Shane T. Ahyong, Darryl L. Felder, Rafael Lemaitre, and Keith A. Crandall. 2013. A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda). BMC Evolutionary Biology 13 (1): 128. https://doi.org/10.1186/1471-2148-13-128
Bracken-Grissom, Heather D., Shane T. Ahyong, Richard D. Wilkinson, Rodney M. Feldmann, Carrie E. Schweitzer, Jesse W. Breinholt, Matthew Bendall, Ferran Palero, Tin-Yam Chan, Darryl L. Felder, Rafael Robles, Ka-Hou Chu, Ling-Ming Tsang, Dohyup Kim, Joel W. Martin, and Keith A. Crandall. 2014. The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology: syu008v1-syu008. https://doi.org/10.1093/sysbio/syu008
Bracken‐Grissom, H. D., Felder, D. L., Vollmer, N. L., Martin, J. W., & Crandall, K. A. (2012). Phylogenetics links monster larva to deep‐sea shrimp. Ecology and Evolution 2 (10): 2367-2373. https://doi.org/10.1002/ece3.347
Brad R Ruhfel, Matthew A Gitzendanner, Pamela S Soltis, Douglas E Soltis, J Burleigh. 2014. From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evol Biol 14(1):23. https://doi.org/10.1186/1471-2148-14-23
Brady, S., Schultz T., Fisher B., & Ward P. 2006. Evaluating alternative hypotheses for the early evolution and diversification of ants. Proceedings of the National Academy of Sciences of the United States of America, 103 (48): 18172-18177. https://doi.org/10.1073/pnas.0605858103
Breinholt, JW, Porter ML, Crandall KA (2012) Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae). PLoS ONE 7 (9): e46105 https://doi.org/10.1371/journal.pone.0046105
Bremer, B., & Eriksson, O. 2009. Time tree of Rubiaceae: Phylogeny and dating the family, subfamilies and tribes. Internat. J. Plant Sci. 170: 766-793.
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Brent D. Mishler, Nunzio Knerr, Carlos E. González-Orozco, Andrew H. Thornhill, Shawn W. Laffan, Joseph T. Miller, 2014, 'Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia', Nature Communications, vol. 5 https://doi.org/10.1038/ncomms5473
Brumfield, R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61 (2): 346-367. https://doi.org/10.1111/j.1558-5646.2007.00039.x
Burlakoti R.R., Neate S.M., Adhikari T., Gyawali S., Salas B., Steffenson B.J., & Schwarz P.B. 2011. Trichothecene Profiling and Population Genetic Analysis of Gibberella zeae from Barley in North Dakota and Minnesota. Phytopathology, 101(6): 687-695. https://doi.org/10.1094/PHYTO-04-10-0101
Burlakoti, R. R., S. Ali, G. A. Secor, S. M. Neate, M. P. McMullen, and T. B. Adhikari. "Genetic relationships among populations of Gibberella zeae from barley, wheat, potato, and sugar beet in the Upper Midwest of the United States." Phytopathology 98, no. 9 (2008): 969-976. https://doi.org/10.1094/PHYTO-98-9-0969
Burns, J. H., Faden, R. B., & Steppan, S. J. 2011. Phylogenetic studies in the Commelinaceae subfamily Commelinoideae inferred from nuclear ribosomal and chloroplast DNA sequences. Syst. Bot. 36: 268-276. https://doi.org/10.1600/036364411X569471
Burns, Kevin J., Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution 75: 41-77. https://doi.org/10.1016/j.ympev.2014.02.006
Bärmann, E.V., Rössner G.E., & Wörheide G. 2013. A revised phylogeny of Antilopini (Bovidae, Artiodactyla) using combined mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 67 (2): 484-493. https://doi.org/10.1016/j.ympev.2013.02.015
Cabezas, P., Sanmartin I., Paulay G., Macpherson E., & Machordom A. 2011. Deep under the sea: unraveling the evolutionary history of the deep-sea squat lobster Paramunida (Decapoda, Munididae). Evolution 66 (6): 1878-1896.
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Cabrera L., Salazar G., Chase M., Mayo S., Bogner J., & Davila P. 2008. Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and non-coding plastid DNA. American Journal of Botany, 95: 1153-1165. https://doi.org/10.3732/ajb.0800073
Callejas R., Davidson C., Jaramillo M., Smith J., Stevens A., & Tepe E. 2008. A phylogeny of the tropical genus Piper using ITS and the chloroplast intron psbJ-petA. Systematic Botany, 33(4), 647-660. https://doi.org/10.1600/036364408786500244
Camara M., Palm M., Van berkum P., & O'neill N. 2002. Molecular phylogeny of Leptosphaeria and Phaeosphaeria. Mycologia, 94(4): 630-640. https://doi.org/10.2307/3761714
Cardillo, Marcel, Olaf R. P. Bininda-Emonds, Elizabeth Boakes, Andy Purvis. 2004. A species-level phylogenetic supertree of marsupials. Journal of Zoology 264 (1): 11-31. https://doi.org/10.1017/S0952836904005539
Cardoso D.B., Cavalcante de lima H., Sch?tz rodrigues R., Queiroz L.P., Pennington R., & Lavin M. 2012. The Bowdichia clade of Genistoid legumes: phylogenetic analysis of combined molecular (ITS, matK and trnL intron) and morphological data and a recircumscription of Diplotropis. Taxon, 61(5): 1074?1087.
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Cardoso D.B., Queiroz L.P., Cavalcante de lima H., Suganuma E., Van den berg C., & Lavin M. 2013. A molecular phylogeny of the Vataireoid legumes underscores floral evolvability that is general to many early-branching papilionoid lineages. American Journal of Botany, 100(2): 403-421.
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Cardoso D.B., Queiroz L.P., Pennington R., Cavalcante de lima H., Fonty E., Wojciechowski M., & Lavin M. 2012. Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early-branching lineages. American Journal of Botany, 99(12): 1991-2013. https://doi.org/10.3732/ajb.1200380
Cariaga, K. A., Pruski, J. F., Oviedo, R., Anderberg, A. A., Lewis, C. E., & Francisco-Ortega, J. (2008). Phylogeny and systematic position of Feddea (Asteraceae: Feddeeae): a taxonomically enigmatic and critically endangered genus endemic to Cuba. Systematic Botany, 33(1), 193-202. https://doi.org/10.1600/036364408783887348
Carlos Montero-Castro, J., Delgado-Salinas, A., De Luna, E., & Eguiarte, L. E. (2006). Phylogenetic Analysisof Cestrum Section Habrothamnus (Solanaceae) Based on Plastid and Nuclear DNA Sequences. Systematic botany, 31(4), 843-850. https://doi.org/10.1600/036364406779695979
Cartwright, P., Evans N., Dunn C., Marques A., Miglietta M., & Collins A. 2008. Phylogenetics of Hydroidolina (Cnidaria, Hydrozoa). Journal of the Marine Biological Association of the United Kingdom 88 (8): 1663-1672. https://doi.org/10.1017/S0025315408002257
Chakrabarty, Prosanta, Matthew P. Davis, W. Leo Smith, Zachary H. Baldwin, John S. Sparks. 2011. Is sexual selection driving diversification of the bioluminescent ponyfishes (Teleostei: Leiognathidae)? Molecular Ecology 20 (13): 2818-2834. https://doi.org/10.1111/j.1365-294X.2011.05112.x
Chandra A., & Huff D. 2007. Salmacisia, a new genus of Tilletiales: reclassification of Tilletia buchloëana causing induced hermaphroditism in buffalograss. Mycologia, 100(1): 81-93. https://doi.org/10.3852/mycologia.100.1.81
Charlton N., Craven K., Afkhami M., Hall B., Swoboda G., Ghimire S.R., & Young C. 2012. Genetic diversity in epichloid endophytes of Bromus laevipes provides evidence for independent hybridization events. Molecular Ecology, .
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Charlton, Nikki D., Kelly D. Craven, Shipra Mittal, Andrew A. Hopkins, and Carolyn A. Young. "Epichloë canadensis, a new interspecific epichloid hybrid symbiotic with Canada wildrye (Elymus canadensis)." Mycologia 104, no. 5 (2012): 1187-1199. https://doi.org/10.3852/11-403
Chaverri P., Gazis R., & Samuels G.J. 2011. Trichoderma amazonicum, a new endophytic species on Hevea brasiliensis and H. guianensis from the Amazon basin. Mycologia103 (1): 139-151 . https://doi.org/10.3852/10-078
Chaverri P., Samuels G., & Stewart E. 2000. Hypocrea virens sp. nov., the teleomorph of Trichoderma virens. Mycologia, 93(6): 1113-1124. https://doi.org/10.2307/3761672
Chaverri, Priscila, Gary J. Samuels, and Kathie T. Hodge. "The genus Podocrella and its nematode-killing anamorph Harposporium." Mycologia 97.2 (2005): 433-443. https://doi.org/10.3852/mycologia.97.2.433
Chaverri, Priscila, Joseph F. Bischoff, Harry C. Evans, and Kathie T. Hodge. "Regiocrella, a new entomopathogenic genus with a pycnidial anamorph and its phylogenetic placement in the Clavicipitaceae." Mycologia 97, no. 6 (2005): 1225-1237. https://doi.org/10.3852/mycologia.97.6.1225
Chaverri, Priscila, and Gary J. Samuels. "EVOLUTION OF HABITAT PREFERENCE AND NUTRITION MODE IN A COSMOPOLITAN FUNGAL GENUS WITH EVIDENCE OF INTERKINGDOM HOST JUMPS AND MAJOR SHIFTS IN ECOLOGY." Evolution (2013). https://doi.org/10.1111/evo.12169
Chen, Wei-Jen, Sébastien Lavoué, and Richard L. Mayden. 2013. Evolutionary origin and early biogeography of otophysan fishes (Ostariophysi: Teleostei). Evolution 67 (8): 2218–2239.
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Chesser, R. Terry, Carol K. L. Yeung, Cheng-Te Yao, Xiu-Hua Tian, Shou-Hsien Li. 2010. Molecular phylogeny of the spoonbills (Aves: Threskiornithidae) based on mitochondrial DNA. Zootaxa 2603: 53-60.
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Cho, S., Zwick A., Regier J., Mitter C., Cummings M.P., Yao J., Du Z., Zhao H., Kawahara A.Y., Weller S.J., Davis D.R., Baixeras J., Brown J.W., & Parr C. 2011. Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?. Systematic Biology 60 (6): 782-796. https://doi.org/10.1093/sysbio/syr079
Christin, P.-A., Sage, T. L., Edwards, E. J., gburn, R. M., Khoshravesh, R., & Sage, R. F. 2011. Complex evolutionary transitions and the significance of c(3)-c(4) intermediate forms of photosynthesis in Molluginaceae. Evolution 65: 643-660. https://doi.org/10.1111/j.1558-5646.2010.01168.x
Chung, K. S., Hipp, A. L., & Roalson, E. H. (2012). Chromosome number evolves independently of genome size in a clade with nonlocalized centromeres (Carex: Cyperaceae). Evolution, 66(9), 2708-2722. https://doi.org/10.1111/j.1558-5646.2012.01624.x.
Cibois, Alice, Jean-Claude Thibault, Céline Bonillo, Christopher E. Filardi, Dick Watling, Eric Pasquet. 2014. Phylogeny and biogeography of the fruit doves (Aves: Columbidae). Molecular Phylogenetics and Evolution 70: 442-453. https://doi.org/10.1016/j.ympev.2013.08.019
Clark J., Wagner W., & Roalson E. 2009. Patterns of diversification and ancestral range reconstruction in the Southeast Asian-Pacific angiosperm lineage Cyrtandra (Gesneriaceae). Molecular Phylogenetics and Evolution, 53(3): 982-994. https://doi.org/10.1016/j.ympev.2009.09.002
Clarkson, J. J., Knapp, S., Garcia, V. F., Olmstead, R. G., Leitch, A. R., & Chase, M. W. (2004). Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. Molecular phylogenetics and evolution, 33(1), 75-90. https://doi.org/10.1016/j.ympev.2004.05.002
Clement W., & Donoghue M. 2011. Dissolution of Viburnum section Megalotinus (Adoxaceae) of Southeast Asia and its implications for morphological evolution and biogeography. International Journal of Plant Sciences, 172(4): 559-573. https://doi.org/10.1086/658927
Coetzee M., Wingfield B., Bloomer P., Ridley G., & Wingfield M.J. 2003. Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia. Mycologia, 95(2): 285-293. https://doi.org/10.2307/3762039
Colangelo, P., A.A. Bannikova, B. Kryštufek, V.S. Lebedev, F. Annesi, E. Capanna, A. Loy. 2010. Molecular systematics and evolutionary biogeography of the genus Talpa (Soricomorpha: Talpidae). Molecular Phylogenetics and Evolution 55 (2): 372-380. https://doi.org/10.1016/j.ympev.2010.01.038
Collado, Javier, Gonzalo Platas, Gerald F. Bills, Ángela Basilio, Francisca Vicente, J. Rubén Tormo, Pilar Hernández, M. Teresa Díez, and Fernando Peláez. "Studies on Morinia: Recognition of Morinia longiappendiculata sp. nov. as a new endophytic fungus, and a new circumscription of Morinia pestalozzioides." Mycologia 98, no. 4 (2006): 616-627. https://doi.org/10.3852/mycologia.98.4.616
Collevatti, R., Colli G., Giugliano L., Werneck F., & Werneck F. 2008. Phylogeny, biogeography and evolution of clutch size in South American lizards of the genus Kentropyx (Squamata: Teiidae). Molecular Ecology 18 (2): 262-278. https://doi.org/10.1111/j.1365-294X.2008.03999.x
Corl A., and Ellegren H. 2013. Sampling strategies for species trees: the effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution 67 (2): 358-366. https://doi.org/10.1016/j.ympev.2013.02.002
Costea M., Garcia I., Docksteder K., & Stefanovic S. 2013. More problems despite bigger flowers: systematics of Cuscuta tinctoria clade (subgenus Grammica, Convolvulaceae) with description of six new species. Systematic Botany.
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Couch B., & Kohn L. 2002. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia, 94(4): 683-693. https://doi.org/10.2307/3761719
Coughenour J., Simmons M., Lombardi J., & Cappa J. 2010. Phylogeny of Celastraceae subfamily Salacioideae and tribe Lophopetaleae Inferred from Morphological Characters and Nuclear and Plastid Genes. Systematic Botany, 35(2): 358-367 https://doi.org/10.1600/036364410791638289
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